Metabarcoding from microbes to mammals: comprehensive bioassessment on a global scale
Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing.
Given pervasive global change, a major challenge facing resource managers is a lack of …
Given pervasive global change, a major challenge facing resource managers is a lack of …
Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation
Metabarcoding of DNA extracted from community samples of whole organisms (whole
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …
[HTML][HTML] Towards a multisensor station for automated biodiversity monitoring
Rapid changes of the biosphere observed in recent years are caused by both small and
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Abstract Analysis of environmental DNA is increasingly used to characterize ecological
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
The future of DNA barcoding: Reflections from early career researchers
Over the last two decades, the use of DNA barcodes has transformed our ability to identify
and assess life on our planet. Both strengths and weaknesses of the method have been …
and assess life on our planet. Both strengths and weaknesses of the method have been …
[HTML][HTML] Standardized high-throughput biomonitoring using DNA metabarcoding: Strategies for the adoption of automated liquid handlers
Reliable and comprehensive monitoring data are required to trace and counteract
biodiversity loss. High-throughput metabarcoding using DNA extracted from community …
biodiversity loss. High-throughput metabarcoding using DNA extracted from community …
Assessment of benthic invertebrate diversity and river ecological status along an urbanized gradient using environmental DNA metabarcoding and a traditional survey …
F Ji, D Han, L Yan, S Yan, J Zha, J Shen - Science of the Total Environment, 2022 - Elsevier
Benthic invertebrate diversity is one of the most commonly used bioindicators for assessing
aquatic ecosystem health in river systems. Although an increasing number of studies have …
aquatic ecosystem health in river systems. Although an increasing number of studies have …
Network analysis with either Illumina or MinION reveals that detecting vertebrate species requires metabarcoding of iDNA from a diverse fly community
DNA obtained from invertebrates (iDNA) can be metabarcoded in order to survey vertebrate
communities. However, little attention has been paid to the interaction between the …
communities. However, little attention has been paid to the interaction between the …
Mapping biodiversity hotspots of fish communities in subtropical streams through environmental DNA
RC Blackman, M Osathanunkul, J Brantschen… - Scientific reports, 2021 - nature.com
Large tropical and subtropical rivers are among the most biodiverse ecosystems worldwide,
but also suffer from high anthropogenic pressures. These rivers are hitherto subject to little …
but also suffer from high anthropogenic pressures. These rivers are hitherto subject to little …
Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …