What are 3′ UTRs doing?

C Mayr - Cold Spring Harbor perspectives in biology, 2019 - cshperspectives.cshlp.org
SUMMARY 3′ untranslated regions (3′ UTRs) of messenger RNAs (mRNAs) are best
known to regulate mRNA-based processes, such as mRNA localization, mRNA stability, and …

Regulation by 3′-untranslated regions

C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

SX Ge, EW Son, R Yao - BMC bioinformatics, 2018 - Springer
Background RNA-seq is widely used for transcriptomic profiling, but the bioinformatics
analysis of resultant data can be time-consuming and challenging, especially for biologists …

MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis

V Licursi, F Conte, G Fiscon, P Paci - BMC bioinformatics, 2019 - Springer
Background miRNAs regulate the expression of several genes with one miRNA able to
target multiple genes and with one gene able to be simultaneously targeted by more than …

Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

S Funakoshi, I Fernandes, O Mastikhina… - Nature …, 2021 - nature.com
Compact cardiomyocytes that make up the ventricular wall of the adult heart represent an
important therapeutic target population for modeling and treating cardiovascular diseases …

Sequence, structure, and context preferences of human RNA binding proteins

D Dominguez, P Freese, MS Alexis, A Su, M Hochman… - Molecular cell, 2018 - cell.com
RNA binding proteins (RBPs) orchestrate the production, processing, and function of
mRNAs. Here, we present the affinity landscapes of 78 human RBPs using an unbiased …

Regulation of the master regulator FOXM1 in cancer

GB Liao, XZ Li, S Zeng, C Liu, SM Yang, L Yang… - Cell Communication and …, 2018 - Springer
FOXM1 (forkhead box protein M1) is a critical proliferation-associated transcription factor
that is widely spatiotemporally expressed during the cell cycle. It is closely involved with the …

Genetic and epigenetic fine mapping of causal autoimmune disease variants

KKH Farh, A Marson, J Zhu, M Kleinewietfeld… - Nature, 2015 - nature.com
Genome-wide association studies have identified loci underlying human diseases, but the
causal nucleotide changes and mechanisms remain largely unknown. Here we developed a …

RIPK1 mediates axonal degeneration by promoting inflammation and necroptosis in ALS

Y Ito, D Ofengeim, A Najafov, S Das, S Saberi, Y Li… - Science, 2016 - science.org
Mutations in the optineurin (OPTN) gene have been implicated in both familial and sporadic
amyotrophic lateral sclerosis (ALS). However, the role of this protein in the central nervous …

Exercise rejuvenates quiescent skeletal muscle stem cells in old mice through restoration of Cyclin D1

JO Brett, M Arjona, M Ikeda, M Quarta, A de Morrée… - Nature …, 2020 - nature.com
Ageing impairs tissue repair. This defect is pronounced in skeletal muscle, whose
regeneration by muscle stem cells (MuSCs) is robust in young-adult animals, but inefficient …