Prognostic and predictive molecular biomarkers for colorectal cancer: updates and challenges

E Koncina, S Haan, S Rauh, E Letellier - Cancers, 2020 - mdpi.com
Colorectal cancer (CRC) is a leading cause of death among cancer patients. This
heterogeneous disease is characterized by alterations in multiple molecular pathways …

Identifying significantly impacted pathways: a comprehensive review and assessment

TM Nguyen, A Shafi, T Nguyen, S Draghici - Genome biology, 2019 - Springer
Background Many high-throughput experiments compare two phenotypes such as disease
vs. healthy, with the goal of understanding the underlying biological phenomena …

FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

DP Leader, SA Krause, A Pandit… - Nucleic acids …, 2018 - academic.oup.com
Abstract FlyAtlas 2 (www. flyatlas2. org) is part successor, part complement to the FlyAtlas
database and web application for studying the expression of the genes of Drosophila …

Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients.

B Győrffy, A Lánczky, Z Szállási - Endocrine-related cancer, 2012 - real.mtak.hu
The validation of prognostic biomarkers in large independent patient cohorts is a major
bottleneck in ovarian cancer research. We implemented an online tool to assess the …

An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients

B Györffy, A Lanczky, AC Eklund, C Denkert… - Breast cancer research …, 2010 - Springer
Validating prognostic or predictive candidate genes in appropriately powered breast cancer
cohorts are of utmost interest. Our aim was to develop an online tool to draw survival plots …

Synovial tissue research: a state-of-the-art review

C Orr, E Vieira-Sousa, DL Boyle, MH Buch… - Nature Reviews …, 2017 - nature.com
The synovium is the major target tissue of inflammatory arthritides such as rheumatoid
arthritis. The study of synovial tissue has advanced considerably throughout the past few …

Adenovirus vector induced innate immune responses: impact upon efficacy and toxicity in gene therapy and vaccine applications

ZC Hartman, DM Appledorn, A Amalfitano - Virus research, 2008 - Elsevier
Extensively characterized, modified, and employed for a variety of purposes, adenovirus
(Ad) vectors are generally regarded as having great potential by many applied virologists …

Breast cancer metastasis: markers and models

B Weigelt, JL Peterse, LJ Van't Veer - Nature reviews cancer, 2005 - nature.com
Breast cancer starts as a local disease, but it can metastasize to the lymph nodes and distant
organs. At primary diagnosis, prognostic markers are used to assess whether the transition …

Comparative analysis of proteome and transcriptome variation in mouse

A Ghazalpour, B Bennett, VA Petyuk, L Orozco… - PLoS …, 2011 - journals.plos.org
The relationships between the levels of transcripts and the levels of the proteins they encode
have not been examined comprehensively in mammals, although previous work in plants …

Integrated brain circuits: astrocytic networks modulate neuronal activity and behavior

MM Halassa, PG Haydon - Annual review of physiology, 2010 - annualreviews.org
The past decade has seen an explosion of research on roles of neuron-astrocyte
interactions in the control of brain function. We highlight recent studies performed on the …