[HTML][HTML] The expanding bacterial type IV secretion lexicon
M Bhatty, JAL Gomez, PJ Christie - Research in microbiology, 2013 - Elsevier
The bacterial type IV secretion systems (T4SSs) comprise a biologically diverse group of
translocation systems functioning to deliver DNA or protein substrates from donor to target …
translocation systems functioning to deliver DNA or protein substrates from donor to target …
Computational prediction of effector proteins in fungi: opportunities and challenges
Effector proteins are mostly secretory proteins that stimulate plant infection by manipulating
the host response. Identifying fungal effector proteins and understanding their function is of …
the host response. Identifying fungal effector proteins and understanding their function is of …
Identification of protein secretion systems in bacterial genomes
Bacteria with two cell membranes (diderms) have evolved complex systems for protein
secretion. These systems were extensively studied in some model bacteria, but the …
secretion. These systems were extensively studied in some model bacteria, but the …
oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements
X Li, Y Xie, M Liu, C Tai, J Sun, Z Deng… - Nucleic acids …, 2018 - academic.oup.com
Abstract oriTfinder is a web server that facilitates the rapid identification of the origin of
transfer site (oriT) of a conjugative plasmid or chromosome-borne integrative and …
transfer site (oriT) of a conjugative plasmid or chromosome-borne integrative and …
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
Conjugation of DNA through a type IV secretion system (T4SS) drives horizontal gene
transfer. Yet little is known on the diversity of these nanomachines. We previously found that …
transfer. Yet little is known on the diversity of these nanomachines. We previously found that …
EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems
V Eichinger, T Nussbaumer, A Platzer… - Nucleic acids …, 2016 - academic.oup.com
Protein secretion systems play a key role in the interaction of bacteria and hosts. EffectiveDB
(http://effectivedb. org) contains pre-calculated predictions of bacterial secreted proteins and …
(http://effectivedb. org) contains pre-calculated predictions of bacterial secreted proteins and …
Influence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains
A Moya-Beltrán, M Gajdosik, C Rojas-Villalobos… - Scientific Reports, 2023 - nature.com
The recent revision of the Acidithiobacillia class using genomic taxonomy methods has
shown that, in addition to the existence of previously unrecognized genera and species …
shown that, in addition to the existence of previously unrecognized genera and species …
Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination
G Di Venanzio, KH Moon, BS Weber… - Proceedings of the …, 2019 - National Acad Sciences
Acinetobacter baumannii (Ab) is a nosocomial pathogen with one of the highest rates of
multidrug resistance (MDR). This is partially due to transmissible plasmids. Many Ab strains …
multidrug resistance (MDR). This is partially due to transmissible plasmids. Many Ab strains …
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of …
Background Klebsiella pneumoniae is an important opportunistic pathogen associated with
nosocomial and community-acquired infections. A wide repertoire of virulence and …
nosocomial and community-acquired infections. A wide repertoire of virulence and …
SecReT4: a web-based bacterial type IV secretion system resource
D Bi, L Liu, C Tai, Z Deng, K Rajakumar… - Nucleic acids …, 2013 - academic.oup.com
Abstract SecReT4 (http://db-mml. sjtu. edu. cn/SecReT4/) is an integrated database
providing comprehensive information of type IV secretion systems (T4SSs) in bacteria …
providing comprehensive information of type IV secretion systems (T4SSs) in bacteria …