Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

S Orchard, S Kerrien, S Abbani, B Aranda, J Bhate… - Nature …, 2012 - nature.com
Abstract The International Molecular Exchange (IMEx) consortium is an international
collaboration between major public interaction data providers to share literature-curation …

Fundamentals of protein interaction network mapping

J Snider, M Kotlyar, P Saraon, Z Yao… - Molecular systems …, 2015 - embopress.org
Studying protein interaction networks of all proteins in an organism (“interactomes”) remains
one of the major challenges in modern biomedicine. Such information is crucial to …

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

S Orchard, M Ammari, B Aranda, L Breuza… - Nucleic acids …, 2014 - academic.oup.com
IntAct (freely available at http://www. ebi. ac. uk/intact) is an open-source, open data
molecular interaction database populated by data either curated from the literature or from …

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

K Breuer, AK Foroushani, MR Laird… - Nucleic acids …, 2013 - academic.oup.com
Abstract InnateDB (http://www. innatedb. com) is an integrated analysis platform that has
been specifically designed to facilitate systems-level analyses of mammalian innate …

MINT, the molecular interaction database: 2012 update

L Licata, L Briganti, D Peluso, L Perfetto… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Molecular INTeraction Database (MINT, http://mint. bio. uniroma2. it/mint/) is a
public repository for protein–protein interactions (PPI) reported in peer-reviewed journals …

The IntAct molecular interaction database in 2012

S Kerrien, B Aranda, L Breuza, A Bridge… - Nucleic acids …, 2012 - academic.oup.com
IntAct is an open-source, open data molecular interaction database populated by data either
curated from the literature or from direct data depositions. Two levels of curation are now …

Protein–protein interactions essentials: key concepts to building and analyzing interactome networks

J De Las Rivas, C Fontanillo - PLoS computational biology, 2010 - journals.plos.org
Decades of research into cell biology, molecular biology, biochemistry, structural biology,
and biophysics have produced a remarkable compendium of knowledge on the function and …

Interactome3D: adding structural details to protein networks

R Mosca, A Céol, P Aloy - Nature methods, 2013 - nature.com
Network-centered approaches are increasingly used to understand the fundamentals of
biology. However, the molecular details contained in the interaction networks, often …

HPIDB 2.0: a curated database for host–pathogen interactions

MG Ammari, CR Gresham, FM McCarthy, B Nanduri - Database, 2016 - academic.oup.com
Identification and analysis of host–pathogen interactions (HPI) is essential to study infectious
diseases. However, HPI data are sparse in existing molecular interaction databases …

The BioGRID interaction database: 2011 update

C Stark, BJ Breitkreutz, A Chatr-Aryamontri… - Nucleic acids …, 2010 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID) is a public
database that archives and disseminates genetic and protein interaction data from model …