Robust nucleus/cell detection and segmentation in digital pathology and microscopy images: a comprehensive review

F Xing, L Yang - IEEE reviews in biomedical engineering, 2016 - ieeexplore.ieee.org
Digital pathology and microscopy image analysis is widely used for comprehensive studies
of cell morphology or tissue structure. Manual assessment is labor intensive and prone to …

[HTML][HTML] The cell tracking challenge: 10 years of objective benchmarking

M Maška, V Ulman, P Delgado-Rodriguez… - Nature …, 2023 - nature.com
Abstract The Cell Tracking Challenge is an ongoing benchmarking initiative that has
become a reference in cell segmentation and tracking algorithm development. Here, we …

Untangling cell tracks: Quantifying cell migration by time lapse image data analysis

CM Svensson, A Medyukhina, I Belyaev… - Cytometry Part …, 2018 - Wiley Online Library
Automated microscopy has given researchers access to great amounts of live cell imaging
data from in vitro and in vivo experiments. Much focus has been put on extracting cell tracks …

Assessment of algorithms for mitosis detection in breast cancer histopathology images

M Veta, PJ Van Diest, SM Willems, H Wang… - Medical image …, 2015 - Elsevier
The proliferative activity of breast tumors, which is routinely estimated by counting of mitotic
figures in hematoxylin and eosin stained histology sections, is considered to be one of the …

A benchmark for comparison of cell tracking algorithms

M Maška, V Ulman, D Svoboda, P Matula… - …, 2014 - academic.oup.com
Motivation: Automatic tracking of cells in multidimensional time-lapse fluorescence
microscopy is an important task in many biomedical applications. A novel framework for …

[HTML][HTML] CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images

MY Lee, JS Bedia, SS Bhate, GL Barlow, D Phillips… - BMC …, 2022 - Springer
Background Algorithmic cellular segmentation is an essential step for the quantitative
analysis of highly multiplexed tissue images. Current segmentation pipelines often require …

[图书][B] Healthcare data analytics

CK Reddy, CC Aggarwal - 2015 - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …

[HTML][HTML] Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy

T Scherr, K Löffler, M Böhland, R Mikut - PLoS One, 2020 - journals.plos.org
The accurate segmentation and tracking of cells in microscopy image sequences is an
important task in biomedical research, eg, for studying the development of tissues, organs or …

3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy

A Dufour, R Thibeaux, E Labruyere… - IEEE transactions on …, 2010 - ieeexplore.ieee.org
Variational deformable models have proven over the past decades a high efficiency for
segmentation and tracking in 2-D sequences. Yet, their application to 3-D time-lapse images …

EmbedTrack—Simultaneous cell segmentation and tracking through learning offsets and clustering bandwidths

K Löffler, R Mikut - IEEE Access, 2022 - ieeexplore.ieee.org
To shed light on the processes driving cell migration, a systematic analysis of the cell
behavior is required. Since the manual analysis of hundreds or even thousands of cells is …