Higher-order connections between stereotyped subsets: implications for improved patient classification in CLL

A Agathangelidis, A Chatzidimitriou… - Blood, The Journal …, 2021 - ashpublications.org
Chronic lymphocytic leukemia (CLL) is characterized by the existence of subsets of patients
with (quasi) identical, stereotyped B-cell receptor (BcR) immunoglobulins. Patients in certain …

Distinctive signaling profiles with distinct biological and clinical implications in aggressive CLL subsets with stereotyped B-cell receptor immunoglobulin

M Gerousi, S Laidou, K Gemenetzi… - Frontiers in …, 2021 - frontiersin.org
The ontogeny and evolution of chronic lymphocytic leukemia (CLL) are critically dependent
on interactions between leukemic cells and their microenvironment, including antigens, the …

Stereotyped B cell receptor immunoglobulins in B cell lymphomas

A Agathangelidis, F Psomopoulos… - Lymphoma: Methods and …, 2019 - Springer
Comprehensive analysis of the clonotypic B cell receptor immunoglobulin (BcR IG) gene
rearrangement sequences in patients with mature B cell neoplasms has led to the …

A computer vision approach to align and compare protein cavities: application to fragment-based drug design

M Eguida, D Rognan - Journal of Medicinal Chemistry, 2020 - ACS Publications
Identifying local similarities in binding sites from distant proteins is a major hurdle to rational
drug design. We herewith present a novel method, borrowed from computer vision, adapted …

Functional clustering of B cell receptors using sequence and structural features

Z Xu, S Li, J Rozewicki, K Yamashita… - … Systems Design & …, 2019 - pubs.rsc.org
The repertoires of B cell receptors (BCRs), which can be captured by single cell-resolution
sequencing technologies, contain a personal history of a donor's antigen exposure. One of …

The significance of B-cell receptor stereotypy in chronic lymphocytic leukemia: biological and clinical implications

E Vlachonikola, E Sofou… - Hematology …, 2021 - hemonc.theclinics.com
Chronic lymphocytic leukemia (CLL) is the most common adult leukemia in the West,
characterized by the clonal expansion and accumulation of mature B cells in the a Institute of …

Alzheimer's Disease: the role of mutations in protein folding

E Polychronidou, A Avramouli, P Vlamos - GeNeDis 2018: Genetics and …, 2020 - Springer
Misfolded proteins result when a protein follows the wrong folding pathway. Accumulation of
misfolded proteins can cause disorders, known as amyloid diseases. Unfortunately, some of …

Adding 3D structure support to immuneML

WS Ye - 2023 - duo.uio.no
Adaptive immune receptor repertoire (AIRR) data is used for research into the immune
system. immuneML is a machine learning platform used for analysis of adaptive immune …

Biomedical Applications of Precision Medicine in Neurodegenerative Diseases

E Polychronidou, P Vlamos - Handbook of Computational …, 2022 - Springer
Healthcare has seen massive data growth over the last several years, with some reports
estimating that healthcare data generation increases by 48% annually. The advent of …

Structural analysis on mutations related to Alzheimer's disease

A Avramouli, E Polychronidou, P Vlamos - EMBnet. journal, 2021 - journal.embnet.org
Proteins have a significant role in all biological processes. The functional properties of
proteins rely upon their three-dimensional structures. Over the last twenty years substantial …