[HTML][HTML] SANDI: a compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI

M Palombo, A Ianus, M Guerreri, D Nunes… - Neuroimage, 2020 - Elsevier
This work introduces a compartment-based model for apparent cell body (namely soma) and
neurite density imaging (SANDI) using non-invasive diffusion-weighted MRI (DW-MRI). The …

Training data distribution significantly impacts the estimation of tissue microstructure with machine learning

NG Gyori, M Palombo, CA Clark… - Magnetic resonance …, 2022 - Wiley Online Library
Purpose Supervised machine learning (ML) provides a compelling alternative to traditional
model fitting for parameter mapping in quantitative MRI. The aim of this work is to …

[HTML][HTML] Neural networks for parameter estimation in microstructural MRI: application to a diffusion-relaxation model of white matter

JP de Almeida Martins, M Nilsson, B Lampinen… - NeuroImage, 2021 - Elsevier
Specific features of white matter microstructure can be investigated by using biophysical
models to interpret relaxation-diffusion MRI brain data. Although more intricate models have …

[HTML][HTML] SPHERIOUSLY? The challenges of estimating sphere radius non-invasively in the human brain from diffusion MRI

M Afzali, M Nilsson, M Palombo, DK Jones - Neuroimage, 2021 - Elsevier
Abstract The Soma and Neurite Density Imaging (SANDI) three-compartment model was
recently proposed to disentangle cylindrical and spherical geometries, attributed to neurite …

[HTML][HTML] On the potential for mapping apparent neural soma density via a clinically viable diffusion MRI protocol

NG Gyori, CA Clark, DC Alexander, E Kaden - Neuroimage, 2021 - Elsevier
Diffusion MRI is a valuable tool for probing tissue microstructure in the brain noninvasively.
Today, model-based techniques are widely available and used for white matter …

[PDF][PDF] Improving neural soma imaging using the power spectrum of the free gradient waveforms

M Afzali, M Palombo, L Mueller, H Zhang… - Proc. Intl. Soc. Mag …, 2020 - researchgate.net
Diffusion magnetic resonance imaging is a non-invasive technique to probe the
microstructural features of tissue. Conventional diffusion encoding is unable to disentangle …

SPHERIOUSLY? The challenges of estimating spherical pore size non-invasively in the human brain from diffusion MRI

M Afzali, M Nilsson, M Palombo, DK Jones - bioRxiv, 2020 - biorxiv.org
Abstract The Soma and Neurite Density Imaging (SANDI) three-compartment model was
recently proposed to disentangle cylindrical and spherical geometries, attributed to neurite …

Discrepancy between in-vivo measurements and monte-carlo simulations with spherical structures in b-tensor encoding

N Gyori, MG Hall, CA Clark… - … society for magnetic …, 2020 - archive.ismrm.org
In in-vivo B-tensor encoding measurements, linear tensor encoding (LTE) and spherical
tensor encoding (STE) waveforms estimate the same mean diffusivity in brain white and grey …

Deep learning framework for accelerating revised-NODDI parameter estimation with tensor-valued diffusion encoding

M Guerreri, H Azadbakht, H Zhang - archive.ismrm.org
This work demonstrates the feasibility of using deep learning (DL) to accelerate revised-
NODDI parameter estimation with data acquired using tensor-valued diffusion encoding …

Towards Clinical Translation of Microscopic Diffusion Spectrum Imaging

E Kaden, NG Gyori, I Dragonu, CA Clark… - archive.ismrm.org
Conventional wisdom suggests that it is necessary to average the diffusion signal over the
gradient directions to map microstructural features in the presence of orientational …