The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

TE Sandberg, MJ Salazar, LL Weng, BO Palsson… - Metabolic …, 2019 - Elsevier
Harnessing the process of natural selection to obtain and understand new microbial
phenotypes has become increasingly possible due to advances in culturing techniques …

Fluxomics-new metabolomics approaches to monitor metabolic pathways

AH Emwas, K Szczepski, I Al-Younis… - Frontiers in …, 2022 - frontiersin.org
Fluxomics is an innovative-omics research field that measures the rates of all intracellular
fluxes in the central metabolism of biological systems. Fluxomics gathers data from multiple …

[HTML][HTML] Current status and applications of adaptive laboratory evolution in industrial microorganisms

SR Lee, P Kim - Journal of Microbiology and Biotechnology, 2020 - ncbi.nlm.nih.gov
Adaptive laboratory evolution (ALE) is an evolutionary engineering approach in artificial
conditions that improves organisms through the imitation of natural evolution. Due to the …

[HTML][HTML] Design and construction of microbial cell factories based on systems biology

W Yan, Z Cao, M Ding, Y Yuan - Synthetic and systems biotechnology, 2023 - Elsevier
Environmental sustainability is an increasingly important issue in industry. As an
environmentally friendly and sustainable way, constructing microbial cell factories to …

The impact of systems biology on bioprocessing

K Campbell, J Xia, J Nielsen - Trends in Biotechnology, 2017 - cell.com
Bioprocessing offers a sustainable and green approach to the production of chemicals.
However, a bottleneck in introducing bioprocesses is cell factory development, which is …

From systems biology to metabolically engineered cells—an omics perspective on the development of industrial microbes

J Becker, C Wittmann - Current opinion in microbiology, 2018 - Elsevier
Green routes are indispensable for a sustainable production of energy, chemicals and
materials, and health and nutrition products from renewable resources. Naturally, microbes …

The Model System Saccharomyces cerevisiae Versus Emerging Non-Model Yeasts for the Production of Biofuels

MP Lacerda, EJ Oh, C Eckert - Life, 2020 - mdpi.com
Microorganisms are effective platforms for the production of a variety of chemicals including
biofuels, commodity chemicals, polymers and other natural products. However, deep cellular …

FLYCOP: metabolic modeling-based analysis and engineering microbial communities

B García-Jiménez, JL García, J Nogales - Bioinformatics, 2018 - academic.oup.com
Motivation Synthetic microbial communities begin to be considered as promising
multicellular biocatalysts having a large potential to replace engineered single strains in …

[HTML][HTML] OptCouple: joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs

K Jensen, V Broeken, ASL Hansen… - Metabolic engineering …, 2019 - Elsevier
Biological production of chemicals is an attractive alternative to petrochemical-based
production, due to advantages in environmental impact and the spectrum of feasible targets …

Selecting the best: evolutionary engineering of chemical production in microbes

D Shepelin, ASL Hansen, R Lennen, H Luo… - Genes, 2018 - mdpi.com
Microbial cell factories have proven to be an economical means of production for many bulk,
specialty, and fine chemical products. However, we still lack both a holistic understanding of …