Synthetic DNA synthesis and assembly: putting the synthetic in synthetic biology

RA Hughes, AD Ellington - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
The chemical synthesis of DNA oligonucleotides and their assembly into synthons, genes,
circuits, and even entire genomes by gene synthesis methods has become an enabling …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Automated solution-phase multiplicative synthesis of complex glycans up to a 1,080-mer

W Yao, DC Xiong, Y Yang, C Geng, Z Cong, F Li… - Nature …, 2022 - nature.com
Carbohydrates play essential roles in nature, such as in cell–cell communication, cell growth
and immunoresponse. However, the synthesis of structurally well-defined carbohydrates …

A machine learning Automated Recommendation Tool for synthetic biology

T Radivojević, Z Costello, K Workman… - Nature …, 2020 - nature.com
Synthetic biology allows us to bioengineer cells to synthesize novel valuable molecules
such as renewable biofuels or anticancer drugs. However, traditional synthetic biology …

Total synthesis of polysaccharides by automated glycan assembly

AA Joseph, A Pardo-Vargas… - Journal of the American …, 2020 - ACS Publications
Polysaccharides are the most abundant biopolymers on earth that serve various structural
and modulatory functions. Pure, completely defined linear and branched polysaccharides …

Biotechnological domestication of pseudomonads using synthetic biology

PI Nikel, E Martínez-García, V De Lorenzo - Nature Reviews …, 2014 - nature.com
Much of contemporary synthetic biology research relies on the use of bacterial chassis for
plugging-in and plugging-out genetic circuits and new-to-nature functionalities. However …

DNA-based storage: Trends and methods

SMHT Yazdi, HM Kiah, E Garcia-Ruiz… - … , Biological and Multi …, 2015 - ieeexplore.ieee.org
We provide an overview of current approaches to DNA-based storage system design and of
accompanying synthesis, sequencing and editing methods. We also introduce and analyze …

Measurements of translation initiation from all 64 codons in E. coli

A Hecht, J Glasgow, PR Jaschke… - Nucleic acids …, 2017 - academic.oup.com
Our understanding of translation underpins our capacity to engineer living systems. The
canonical start codon (AUG) and a few near-cognates (GUG, UUG) are considered as the …

Multiplexed gene synthesis in emulsions for exploring protein functional landscapes

C Plesa, AM Sidore, NB Lubock, D Zhang, S Kosuri - Science, 2018 - science.org
Improving our ability to construct and functionally characterize DNA sequences would
broadly accelerate progress in biology. Here, we introduce DropSynth, a scalable, low-cost …

Improving carbon fixation pathways

DC Ducat, PA Silver - Current opinion in chemical biology, 2012 - Elsevier
A recent resurgence in basic and applied research on photosynthesis has been driven in
part by recognition that fulfilling future food and energy requirements will necessitate …