Effects and mechanisms of phthalates' action on reproductive processes and reproductive health: a literature review

H Hlisníková, I Petrovičová, B Kolena… - International journal of …, 2020 - mdpi.com
The production of plastic products, which requires phthalate plasticizers, has resulted in the
problems for human health, especially that of reproductive health. Phthalate exposure can …

Intersex studies: A systematic review of international health literature

T Jones - Sage Open, 2018 - journals.sagepub.com
There is a need to better understand contemporary issues of nomenclature and group
construction around people with intersex variations shaping health research and practices …

Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

A Pratapa, AP Jalihal, JN Law, A Bharadwaj… - Nature methods, 2020 - nature.com
We present a systematic evaluation of state-of-the-art algorithms for inferring gene
regulatory networks from single-cell transcriptional data. As the ground truth for assessing …

Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model

J Wang, Y Chen, Q Zou - PLoS Genetics, 2023 - journals.plos.org
The gene regulatory structure of cells involves not only the regulatory relationship between
two genes, but also the cooperative associations of multiple genes. However, most gene …

Minimal frustration underlies the usefulness of incomplete regulatory network models in biology

S Tripathi, DA Kessler, H Levine - Proceedings of the …, 2023 - National Acad Sciences
Regulatory networks as large and complex as those implicated in cell-fate choice are
expected to exhibit intricate, very high-dimensional dynamics. Cell-fate choice, however, is a …

Inferring single-cell gene regulatory network by non-redundant mutual information

Y Zeng, Y He, R Zheng, M Li - Briefings in Bioinformatics, 2023 - academic.oup.com
Gene regulatory network plays a crucial role in controlling the biological processes of living
creatures. Deciphering the complex gene regulatory networks from experimental data …

Evolution of cellular differentiation: from hypotheses to models

P Márquez-Zacarías, RM Pineau, M Gomez… - Trends in Ecology & …, 2021 - cell.com
Cellular differentiation is one of the hallmarks of complex multicellularity, allowing individual
organisms to capitalize on among-cell functional diversity. The evolution of multicellularity is …

Models of cell processes are far from the edge of chaos

KH Park, FX Costa, LM Rocha, R Albert, JC Rozum - PRX life, 2023 - APS
Complex living systems are thought to exist at the “edge of chaos” separating the ordered
dynamics of robust function from the disordered dynamics of rapid environmental …

Biological networks regulating cell fate choice are minimally frustrated

S Tripathi, DA Kessler, H Levine - Physical Review Letters, 2020 - APS
Characterization of the differences between biological and random networks can reveal the
design principles that enable the robust realization of crucial biological functions including …

Leveraging quantum computing for dynamic analyses of logical networks in systems biology

FM Weidner, JD Schwab, S Wölk, F Rupprecht… - Patterns, 2023 - cell.com
The dynamics of cellular mechanisms can be investigated through the analysis of networks.
One of the simplest but most popular modeling strategies involves logic-based models …