The epigenetic control of the transposable element life cycle in plant genomes and beyond

P Liu, D Cuerda-Gil, S Shahid… - Annual Review of …, 2022 - annualreviews.org
Within the life cycle of a living organism, another life cycle exists for the selfish genome
inhabitants, which are called transposable elements (TEs). These mobile sequences invade …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

The Arabidopsis thaliana mobilome and its impact at the species level

L Quadrana, A Bortolini Silveira, GF Mayhew… - elife, 2016 - elifesciences.org
Transposable elements (TEs) are powerful motors of genome evolution yet a
comprehensive assessment of recent transposition activity at the species level is lacking for …

RNA-directed DNA methylation: the evolution of a complex epigenetic pathway in flowering plants

MA Matzke, T Kanno, AJM Matzke - Annual review of plant …, 2015 - annualreviews.org
RNA-directed DNA methylation (RdDM) is an epigenetic process in plants that involves both
short and long noncoding RNAs. The generation of these RNAs and the induction of RdDM …

Comprehensive mechanism of gene silencing and its role in plant growth and development

AH El-Sappah, K Yan, Q Huang, MM Islam… - Frontiers in Plant …, 2021 - frontiersin.org
Gene silencing is a negative feedback mechanism that regulates gene expression to define
cell fate and also regulates metabolism and gene expression throughout the life of an …

The “Polyploid Hop”: shifting challenges and opportunities over the evolutionary lifespan of genome duplications

P Baduel, S Bray, M Vallejo-Marin, F Kolář… - Frontiers in Ecology and …, 2018 - frontiersin.org
The duplication of an entire genome is no small affair. Whole genome duplication (WGD) is
a dramatic mutation with long-lasting effects, yet it occurs repeatedly in all eukaryotic …

Silencing of active transposable elements in plants

D Fultz, SG Choudury, RK Slotkin - Current opinion in plant biology, 2015 - Elsevier
Highlights•Multiple mechanisms exist to repress the mutagenic potential of transposable
element (TE) activity.•Transcriptionally active TEs trigger normally latent pathways including …

Identification of nucleolus-associated chromatin domains reveals a role for the nucleolus in 3D organization of the A. thaliana genome

F Pontvianne, MC Carpentier, N Durut, V Pavlištová… - Cell reports, 2016 - cell.com
The nucleolus is the site of rRNA gene transcription, rRNA processing, and ribosome
biogenesis. However, the nucleolus also plays additional roles in the cell. We isolated …

Evolution of complex genome architecture in gymnosperms

T Wan, Y Gong, Z Liu, YD Zhou, C Dai, Q Wang - GigaScience, 2022 - academic.oup.com
Gymnosperms represent an ancient lineage that diverged from early spermatophytes during
the Devonian. The long fossil records and low diversity in living species prove their complex …

Mosquito genomes are frequently invaded by transposable elements through horizontal transfer

ES Melo, GL Wallau - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are mobile genetic elements that parasitize basically all
eukaryotic species genomes. Due to their complexity, an in-depth TE characterization is only …