SETD2: from chromatin modifier to multipronged regulator of the genome and beyond

TM Molenaar, F van Leeuwen - Cellular and Molecular Life Sciences, 2022 - Springer
Histone modifying enzymes play critical roles in many key cellular processes and are
appealing proteins for targeting by small molecules in disease. However, while the functions …

Promoting elongation with transcript cleavage stimulatory factors

RN Fish, CM Kane - Biochimica et Biophysica Acta (BBA)-Gene Structure …, 2002 - Elsevier
Transcript elongation by RNA polymerase is a dynamic process, capable of responding to a
number of intrinsic and extrinsic signals. A number of elongation factors have been identified …

[HTML][HTML] Human mediator subunit MED26 functions as a docking site for transcription elongation factors

H Takahashi, TJ Parmely, S Sato, C Tomomori-Sato… - Cell, 2011 - cell.com
Promoter-proximal pausing by initiated RNA polymerase II (Pol II) and regulated release of
paused polymerase into productive elongation has emerged as a major mechanism of …

A ubiquitous disordered protein interaction module orchestrates transcription elongation

K Cermakova, J Demeulemeester, V Lux, M Nedomova… - Science, 2021 - science.org
During eukaryotic transcription elongation, RNA polymerase II (RNAP2) is regulated by a
chorus of factors. Here, we identified a common binary interaction module consisting of TFIIS …

Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex

HM Bourbon - Nucleic acids research, 2008 - academic.oup.com
The multisubunit Mediator (MED) complex bridges DNA-bound transcriptional regulators to
the RNA polymerase II (PolII) initiation machinery. In yeast, the 25 MED subunits are …

Multivalency of nucleosome recognition by LEDGF

E Koutná, V Lux, T Kouba, J Škerlová… - Nucleic Acids …, 2023 - academic.oup.com
Eukaryotic transcription is dependent on specific histone modifications. Their recognition by
chromatin readers triggers complex processes relying on the coordinated association of …

Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage

H Kettenberger, KJ Armache, P Cramer - Cell, 2003 - cell.com
The transcription elongation factor TFIIS induces mRNA cleavage by enhancing the intrinsic
nuclease activity of RNA polymerase (Pol) II. We have diffused TFIIS into Pol II crystals and …

Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution

D Wang, DA Bushnell, X Huang, KD Westover, M Levitt… - Science, 2009 - science.org
Transcribing RNA polymerases oscillate between three stable states, two of which, pre-and
posttranslocated, were previously subjected to x-ray crystal structure determination. We …

Identification of an evolutionarily conserved domain in human lens epithelium-derived growth factor/transcriptional co-activator p75 (LEDGF/p75) that binds HIV-1 …

P Cherepanov, E Devroe, PA Silver… - Journal of Biological …, 2004 - ASBMB
Human lens epithelium-derived growth factor/transcriptional co-activator p75 (LEDGF/p75)
protein was recently identified as a binding partner for HIV-1 integrase (IN) in human cells. In …

Structure, function, and activator-induced conformations of the CRSP coactivator

DJ Taatjes, AM Naar, F Andel III, E Nogales, R Tjian - Science, 2002 - science.org
The human cofactor complexes ARC (activator-recruited cofactor) and CRSP (cofactor
required for Sp1 activation) mediate activator-dependent transcription in vitro. Although …