From a binding module to essential catalytic activity: how nature stumbled on a good thing

C Lemay-St-Denis, JN Pelletier - Chemical Communications, 2023 - pubs.rsc.org
Enzymes are complex macromolecules capable of catalyzing a wide variety of chemical
reactions with high efficiency. Nonetheless, biological catalysis can be rudimentary. Here …

Mutational biases favor complexity increases in protein interaction networks after gene duplication

AF Cisneros, L Nielly-Thibault, S Mallik… - Molecular Systems …, 2024 - embopress.org
Biological systems can gain complexity over time. While some of these transitions are likely
driven by natural selection, the extent to which they occur without providing an adaptive …

A conserved SH3-like fold in diverse putative proteins tetramerizes into an oxidoreductase providing an antimicrobial resistance phenotype

C Lemay-St-Denis, L Alejaldre… - … of the Royal …, 2023 - royalsocietypublishing.org
We present a potential mechanism for emergence of catalytic activity that is essential for
survival, from a non-catalytic protein fold. The type B dihydrofolate reductase (DfrB) family of …

The bacterial genomic context of highly trimethoprim-resistant DfrB dihydrofolate reductases highlights an emerging threat to public health

C Lemay-St-Denis, SS Diwan, JN Pelletier - Antibiotics, 2021 - mdpi.com
Type B dihydrofolate reductase (dfrb) genes were identified following the introduction of
trimethoprim in the 1960s. Although they intrinsically confer resistance to trimethoprim (TMP) …

Dual-target inhibitors of the folate pathway inhibit intrinsically trimethoprim-resistant DfrB dihydrofolate reductases

JL Toulouse, G Shi, C Lemay-St-Denis… - ACS medicinal …, 2020 - ACS Publications
Trimethoprim (TMP) is widely used to treat infections in humans and in livestock,
accelerating the incidence of TMP resistance. The emergent and largely untracked type II …

[HTML][HTML] Protein engineering in the 21st century

RA Chica - Protein science: a publication of the Protein Society, 2015 - ncbi.nlm.nih.gov
Protein engineering, the process by which novel proteins with desired properties are
developed, has grown by leaps and bounds since the first examples of protein mutagenesis …

Mutational biases promote neutral increases in the complexity of protein interaction networks following gene duplication

AF Cisneros, L Nielly-Thibault, S Mallik, ED Levy… - bioRxiv, 2023 - biorxiv.org
Biological systems can gain complexity over time. While some of these transitions are likely
driven by natural selection, the extent to which they occur without providing an adaptive …

Small angle neutron scattering studies of R67 dihydrofolate reductase, a tetrameric protein with intrinsically disordered N-termini

PP Bhojane, MR Duff Jr, K Bafna, P Agarwal… - Biochemistry, 2017 - ACS Publications
R67 dihydrofolate reductase (DHFR) is a homotetramer with a single active site pore and no
sequence or structural homology with chromosomal DHFRs. The R67 enzyme provides …

Investigation of classical organic and ionic liquid cosolvents for early-stage screening in fragment-based inhibitor design with unrelated bacterial and human …

JL Toulouse, SMJ Abraham, N Kadnikova… - Assay and drug …, 2017 - liebertpub.com
Drug design by methods such as fragment screening requires effective solubilization of
millimolar concentrations of small organic compounds while maintaining the properties of …

Structure-based analysis of Bacilli and plasmid dihydrofolate reductase evolution

M Alotaibi, BD Reyes, T Le, P Luong, F Valafar… - Journal of Molecular …, 2017 - Elsevier
Dihydrofolate reductase (DHFR), a key enzyme in tetrahydrofolate-mediated biosynthetic
pathways, has a structural motif known to be highly conserved over a wide range of …