Inhibitors of bacterial immune systems: discovery, mechanisms and applications

D Mayo-Muñoz, R Pinilla-Redondo… - Nature Reviews …, 2024 - nature.com
To contend with the diversity and ubiquity of bacteriophages and other mobile genetic
elements, bacteria have developed an arsenal of immune defence mechanisms. Bacterial …

Bacteriophage strategies for overcoming host antiviral immunity

Z Gao, Y Feng - Frontiers in Microbiology, 2023 - frontiersin.org
Phages and their bacterial hosts together constitute a vast and diverse ecosystem. Facing
the infection of phages, prokaryotes have evolved a wide range of antiviral mechanisms …

Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems

SA Shmakov, ZK Barth, KS Makarova… - Nucleic Acids …, 2023 - academic.oup.com
CRISPR-cas loci typically contain CRISPR arrays with unique spacers separating direct
repeats. Spacers along with portions of adjacent repeats are transcribed and processed into …

Molecular basis of dual anti-CRISPR and auto-regulatory functions of AcrIF24

GE Kim, SY Lee, N Birkholz, K Kamata… - Nucleic acids …, 2022 - academic.oup.com
CRISPR-Cas systems are adaptive immune systems in bacteria and archaea that provide
resistance against phages and other mobile genetic elements. To fight against CRISPR-Cas …

Non-canonical inhibition strategies and structural basis of anti-CRISPR proteins targeting type I CRISPR-Cas systems

P Yin, Y Zhang, L Yang, Y Feng - Journal of Molecular Biology, 2023 - Elsevier
Mobile genetic elements (MGEs) such as bacteriophages and their host prokaryotes are
trapped in an eternal battle against each other. To cope with foreign infection, bacteria and …

Structural and functional insights into the chloroplast division site regulators PARC6 and PDV1 in the intermembrane space

Q Sun, X Cao, Z Liu, C An, J Hu… - Proceedings of the …, 2023 - National Acad Sciences
Chloroplast division involves the coordination of protein complexes from the stroma to the
cytosol. The Min system of chloroplasts includes multiple stromal proteins that regulate the …

An anti-CRISPR that represses its own transcription while blocking Cas9-target DNA binding

X Deng, W Sun, X Li, J Wang, Z Cheng… - Nature …, 2024 - nature.com
AcrIIA15 is an anti-CRISPR (Acr) protein that inhibits Staphylococcus aureus Cas9
(SaCas9). Although previous studies suggested it has dual functions, the structural and …

Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor

IA Mukherjee, C Gabel, N Noinaj… - Nature chemical …, 2022 - nature.com
Anti-CRISPR (Acr) proteins are encoded by phages to inactivate CRISPR–Cas systems of
bacteria and archaea and are used to enhance the CRISPR toolbox for genome editing …

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components

C Duan, Y Liu, Y Liu, L Liu, M Cai, R Zhang… - ISME …, 2024 - academic.oup.com
Bathyarchaeia represent a class of archaea common and abundant in sedimentary
ecosystems. Here we report 56 metagenome-assembled genomes of Bathyarchaeia viruses …

In silico approaches for prediction of anti-CRISPR proteins

KS Makarova, YI Wolf, EV Koonin - Journal of molecular biology, 2023 - Elsevier
Numerous viruses infecting bacteria and archaea encode CRISPR-Cas system inhibitors,
known as anti-CRISPR proteins (Acr). The Acrs typically are highly specific for particular …