Machine learning in plant science and plant breeding

ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder - Iscience, 2021 - cell.com
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …

Dynamic regulation of the 26S proteasome: from synthesis to degradation

RS Marshall, RD Vierstra - Frontiers in Molecular Biosciences, 2019 - frontiersin.org
All eukaryotes rely on selective proteolysis to control the abundance of key regulatory
proteins and maintain a healthy and properly functioning proteome. Most of this turnover is …

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif… - autophagy, 2021 - Taylor & Francis
In 2008, we published the first set of guidelines for standardizing research in autophagy.
Since then, this topic has received increasing attention, and many scientists have entered …

Advances in optical phenotyping of cereal crops

D Sun, K Robbins, N Morales, Q Shu, H Cen - Trends in plant science, 2022 - cell.com
Optical sensors and sensing-based phenotyping techniques have become mainstream
approaches in high-throughput phenotyping for improving trait selection and genetic gains …

Multi-omics analysis reveals differential molecular responses to cadmium toxicity in rice root tip and mature zone

L Kuang, T Yan, F Gao, W Tang, D Wu - Journal of Hazardous Materials, 2024 - Elsevier
Cadmium (Cd) is a highly toxic heavy metal that can be readily absorbed by plants and
enriched in human body. Rice (Oryza sativa L.) yield and grain quality are affected by …

Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90. 1 and ROF1

VP Thirumalaikumar, M Gorka, K Schulz… - Autophagy, 2021 - Taylor & Francis
In nature, plants are constantly exposed to many transient, but recurring, stresses. Thus, to
complete their life cycles, plants require a dynamic balance between capacities to recover …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

The past, present, and future of maize improvement: domestication, genomics, and functional genomic routes toward crop enhancement

J Liu, AR Fernie, J Yan - Plant Communications, 2020 - cell.com
After being domesticated from teosinte, cultivated maize (Zea mays ssp. mays) spread
worldwide and now is one of the most important staple crops. Due to its tremendous …

Genetic analyses of the Arabidopsis ATG1 kinase complex reveal both kinase-dependent and independent autophagic routes during fixed-carbon starvation

X Huang, C Zheng, F Liu, C Yang, P Zheng, X Lu… - The Plant …, 2019 - academic.oup.com
Under nutrient and energy-limiting conditions, plants up-regulate sophisticated catabolic
pathways such as autophagy to remobilize nutrients and restore energy homeostasis …

Integrated transcriptome, proteome and metabolome analyses revealed secondary metabolites and auxiliary carbohydrate metabolism augmenting drought tolerance …

AK Dwivedi, V Singh, K Anwar, A Pareek… - Plant Physiology and …, 2023 - Elsevier
Drought is one of the major consequences of climate change and a serious threat to rice
production. Drought stress activates interactions among genes, proteins and metabolites at …