Current developments and challenges in plant viral diagnostics: A systematic review

GT Mehetre, VV Leo, G Singh, A Sorokan, I Maksimov… - Viruses, 2021 - mdpi.com
Plant viral diseases are the foremost threat to sustainable agriculture, leading to several
billion dollars in losses every year. Many viruses infecting several crops have been …

[HTML][HTML] Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics

I Akacin, Ş Ersoy, O Doluca, M Güngörmüşler - Microbiological Research, 2022 - Elsevier
Since the exploration of sequencing began in 2005, third and next-generation sequencing
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …

Bovine respiratory disease: conventional to culture-independent approaches to studying antimicrobial resistance in North America

S Andrés-Lasheras, M Jelinski, R Zaheer, TA McAllister - Antibiotics, 2022 - mdpi.com
Numerous antimicrobial resistance (AMR) surveillance studies have been conducted in
North American feedlot cattle to investigate the major bacterial pathogens of the bovine …

Is a floodplain forest a valuable source for lignin-degrading anaerobic microbial communities: A metagenomic approach

IC Ozsefil, IH Miraloglu, EG Ozbayram, O Uzun, B Ince… - Chemosphere, 2023 - Elsevier
Lignin is one of the most substantial obstacles in the evaluation of lignocellulosic
compounds. Although there are numerous approaches for the enhancement of lignin …

Ten simple rules for investigating (meta) genomic data from environmental ecosystems

P Vuong, MJ Wise, AS Whiteley… - PLOS Computational …, 2022 - journals.plos.org
Metagenomics is the sequencing and study of DNA directly from environmental samples and
is an approach used in microbial ecology to explore the diversity and functions of microbial …

Characterization of the core microbial community across different aggregate sizes in full-scale aerobic granular sludge plants and their relevance to wastewater …

L Ruiz-Haddad, DR Shaw, M Ali, M Pronk… - Water Research, 2025 - Elsevier
Aerobic granular sludge (AGS) technology holds great promise of becoming the standard for
biological wastewater treatment due to its lower energy consumption, small footprint, and …

The geomicrobiology of limestone, sulfuric acid speleogenetic, and volcanic caves: basic concepts and future perspectives

P Turrini, A Chebbi, FP Riggio, P Visca - Frontiers in Microbiology, 2024 - frontiersin.org
Caves are ubiquitous subterranean voids, accounting for a still largely unexplored surface of
the Earth underground. Due to the absence of sunlight and physical segregation, caves are …

Using custom-built primers and nanopore sequencing to evaluate CO-utilizer bacterial and archaeal populations linked to bioH2 production

İ Akaçin, Ş Ersoy, O Doluca, M Güngörmüşler - Scientific Reports, 2023 - nature.com
The microbial community composition of five distinct thermophilic hot springs was effectively
described in this work, using broad-coverage nanopore sequencing (ONT MinION …

[HTML][HTML] Cybergenetic control of microbial community composition

TA Lee, H Steel - Frontiers in Bioengineering and Biotechnology, 2022 - frontiersin.org
The use of bacterial communities in bioproduction instead of monocultures has potential
advantages including increased productivity through division of labour, ability to utilise …

A Round Trip to the Desert: In situ Nanopore Sequencing Informs Targeted Bioprospecting

A Latorre-Pérez, H Gimeno-Valero, K Tanner… - Frontiers in …, 2021 - frontiersin.org
Bioprospecting expeditions are often performed in remote locations, in order to access
previously unexplored samples. Nevertheless, the actual potential of those samples is only …