Optical microscopic imaging, manipulation, and analysis methods for morphogenesis research

TA Katoh, YT Fukai, T Ishibashi - Microscopy, 2024 - academic.oup.com
Morphogenesis is a developmental process of organisms being shaped through complex
and cooperative cellular movements. To understand the interplay between genetic programs …

Trackastra: Transformer-based cell tracking for live-cell microscopy

B Gallusser, M Weigert - arXiv preprint arXiv:2405.15700, 2024 - arxiv.org
Cell tracking is an omnipresent image analysis task in live-cell microscopy. It is similar to
multiple object tracking (MOT), however, each frame contains hundreds of similar-looking …

MEMTRACK: A Deep Learning-Based Approach to Microrobot Tracking in Dense and Low-Contrast Environments

M Sawhney, B Karmarkar, EJ Leaman, A Daw… - arXiv preprint arXiv …, 2023 - arxiv.org
Tracking microrobots is challenging, considering their minute size and high speed. As the
field progresses towards developing microrobots for biomedical applications and conducting …

Active foam dynamics of tissue spheroid fusion

S Ongenae, H Svitina, TER Belpaire, J Vangheel… - bioRxiv, 2024 - biorxiv.org
Three-dimensional tissue spheroids are a key building block in biofabrication, yet the link
between their material properties and active mechanics of individual cells is not fully …

Control of lumen geometry and topology by the interplay between pressure and cell proliferation rate in pancreatic organoids

BH Lee, K Fuji, H Petzold, P Seymour, S Yennek… - bioRxiv, 2024 - biorxiv.org
Many internal organs in multicellular organisms comprise epithelia which enclose fluid-filled
cavities. These are referred to as lumens and their formation is regulated by a wide range of …

2024 World Scientific Publishing Company

D Hörl - Frontiers In Bioimage Informatics Methodology, 2024 - books.google.com
A key challenge in biology is the elucidation of mechanisms underlying the dynamic
processes exhibited by virtually all cells. Even a comparatively simple unicellular organism …

Computational Workflows for Following Processes during Key Events in the Yeast Life Cycle

D Hörl - Frontiers in Bioimage Informatics Methodology, 2024 - World Scientific
A key challenge in biology is the elucidation of mechanisms underlying the dynamic
processes exhibited by virtually all cells. Even a comparatively simple unicellular organism …

Nuclear mechano-confinement induces geometry-dependent HP1α condensate alterations

C Progida, O Hovet, N Nahali, A Halaburkova… - 2024 - researchsquare.com
Cells sense external physical cues through complex processes involving signaling
pathways, cytoskeletal dynamics, and transcriptional regulation to coordinate a cellular …

Information transmission in a cell monolayer: A numerical study

P Nałęcz-Jawecki, P Szyc, F Grabowski, M Kochańczyk… - bioRxiv, 2024 - biorxiv.org
Motivated by the spatiotemporal waves of the MAPK/ERK activity crucial for long-range
communication in regenerating tissues, we investigated stochastic homoclinic fronts …

[PDF][PDF] Exploring Cell Behaviour: A Computational Tool Pipeline Employing Evolutionary Algorithms for Classification and Characterisation

M Amir - 2024 - etheses.whiterose.ac.uk
The thesis investigates the intricate behaviour of individual cells within a population and
their interactions, which are crucial for elucidating processes such as cell proliferation …