Decoding the tumor microenvironment with spatial technologies

LA Walsh, DF Quail - Nature Immunology, 2023 - nature.com
Visualization of the cellular heterogeneity and spatial architecture of the tumor
microenvironment (TME) is becoming increasingly important to understand mechanisms of …

Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future

D Akhoundova, MA Rubin - Cancer Cell, 2022 - cell.com
Next-generation DNA sequencing technology has dramatically advanced clinical oncology
through the identification of therapeutic targets and molecular biomarkers, leading to the …

The local microenvironment drives activation of neutrophils in human brain tumors

RR Maas, K Soukup, N Fournier, M Massara, S Galland… - Cell, 2023 - cell.com
Neutrophils are abundant immune cells in the circulation and frequently infiltrate tumors in
substantial numbers. However, their precise functions in different cancer types remain …

Localization, tissue biology and T cell state—implications for cancer immunotherapy

JM Schenkel, KE Pauken - Nature Reviews Immunology, 2023 - nature.com
Tissue localization is a critical determinant of T cell immunity. CD8+ T cells are contact-
dependent killers, which requires them to physically be within the tissue of interest to kill …

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics

C Engblom, K Thrane, Q Lin, A Andersson, H Toosi… - Science, 2023 - science.org
The spatial distribution of lymphocyte clones within tissues is critical to their development,
selection, and expansion. We have developed spatial transcriptomics of variable, diversity …

Spatial multi-omics analyses of the tumor immune microenvironment

WC Hsieh, BR Budiarto, YF Wang, CY Lin… - Journal of Biomedical …, 2022 - Springer
In the past decade, single-cell technologies have revealed the heterogeneity of the tumor-
immune microenvironment at the genomic, transcriptomic, and proteomic levels and have …

High-sensitive spatially resolved T cell receptor sequencing with SPTCR-seq

JK Benotmane, J Kueckelhaus, P Will, J Zhang… - Nature …, 2023 - nature.com
Spatial resolution of the T cell repertoire is essential for deciphering cancer-associated
immune dysfunction. Current spatially resolved transcriptomic technologies are unable to …

Phenotypic diversity of T cells in human primary and metastatic brain tumors revealed by multiomic interrogation

V Wischnewski, RR Maas, PG Aruffo, K Soukup… - Nature Cancer, 2023 - nature.com
The immune-specialized environment of the healthy brain is tightly regulated to prevent
excessive neuroinflammation. However, after cancer development, a tissue-specific conflict …

[HTML][HTML] Technology meets TILs: Deciphering T cell function in the-omics era

WH Hudson, A Wieland - Cancer cell, 2023 - cell.com
T cells are at the center of cancer immunology because of their ability to recognize mutations
in tumor cells and directly mediate cancer cell killing. Immunotherapies to rejuvenate …

T-cell repertoire diversity: friend or foe for protective antitumor response?

N Porciello, O Franzese, L D'Ambrosio… - Journal of Experimental …, 2022 - Springer
Abstract Profiling the T-Cell Receptor (TCR) repertoire is establishing as a potent approach
to investigate autologous and treatment-induced antitumor immune response. Technical and …