The organization of the bacterial genome

EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …

Microbial lifestyle and genome signatures

C Dutta, S Paul - Current genomics, 2012 - ingentaconnect.com
Microbes are known for their unique ability to adapt to varying lifestyle and environment,
even to the extreme or adverse ones. The genomic architecture of a microbe may bear the …

Ori-Finder 2022: a comprehensive web server for prediction and analysis of bacterial replication origins

MJ Dong, H Luo, F Gao - Genomics, Proteomics & …, 2022 - academic.oup.com
The replication of DNA is a complex biological process that is essential for life. Bacterial
DNA replication is initiated at genomic loci referred to as replication origins (oriC s) …

Ori-Finder: A web-based system for finding oriC s in unannotated bacterial genomes

F Gao, CT Zhang - BMC bioinformatics, 2008 - Springer
Background Chromosomal replication is the central event in the bacterial cell cycle.
Identification of replication origins (oriC s) is necessary for almost all newly sequenced …

Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources

S Vuilleumier, L Chistoserdova, MC Lee, F Bringel… - PloS one, 2009 - journals.plos.org
Background Methylotrophy describes the ability of organisms to grow on reduced organic
compounds without carbon-carbon bonds. The genomes of two pink-pigmented facultative …

Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Quercus acutissima

X Li, Y Li, M Zang, M Li, Y Fang - International Journal of Molecular …, 2018 - mdpi.com
Quercus acutissima, an important endemic and ecological plant of the Quercus genus, is
widely distributed throughout China. However, there have been few studies on its …

Gene inversion potentiates bacterial evolvability and virulence

CN Merrikh, H Merrikh - Nature Communications, 2018 - nature.com
Most bacterial genes are encoded on the leading strand, co-orienting the movement of the
replication machinery with RNA polymerases. This bias reduces the frequency of detrimental …

Differences in codon usage bias between photosynthesis-related genes and genetic system-related genes of chloroplast genomes in cultivated and wild solanum …

R Zhang, L Zhang, W Wang, Z Zhang, H Du… - International Journal of …, 2018 - mdpi.com
Solanum is one of the largest genera, including two important crops—potato (Solanum
tuberosum) and tomato (Solanum lycopersicum). In this study we compared the chloroplast …

Chloroplast genome sequence of Chongming lima bean (Phaseolus lunatus L.) and comparative analyses with other legume chloroplast genomes

S Tian, P Lu, Z Zhang, JQ Wu, H Zhang, H Shen - BMC genomics, 2021 - Springer
Abstract Background Lima bean (Phaseolus lunatus L.) is a member of subfamily
Phaseolinae belonging to the family Leguminosae and an important source of plant proteins …

Comparative and Phylogenetic Analysis Based on the Chloroplast Genome of Coleanthus subtilis (Tratt.) Seidel, a Protected Rare Species of Monotypic Genus

J Ren, J Tian, H Jiang, XX Zhu, FM Mutie… - Frontiers in plant …, 2022 - frontiersin.org
Coleanthus subtilis (Tratt.) Seidel (Poaceae) is an ephemeral grass from the monotypic
genus Coleanthus Seidl, which grows on wet muddy areas such as fishponds or reservoirs …