The dark matter of the cancer genome: aberrations in regulatory elements, untranslated regions, splice sites, non‐coding RNA and synonymous mutations

S Diederichs, L Bartsch, JC Berkmann… - EMBO molecular …, 2016 - embopress.org
Cancer is a disease of the genome caused by oncogene activation and tumor suppressor
gene inhibition. Deep sequencing studies including large consortia such as TCGA and …

Cleavage and polyadenylation: Ending the message expands gene regulation

J Neve, R Patel, Z Wang, A Louey, AM Furger - RNA biology, 2017 - Taylor & Francis
Cleavage and polyadenylation (pA) is a fundamental step that is required for the maturation
of primary protein encoding transcripts into functional mRNAs that can be exported from the …

On the function and relevance of alternative 3′‐UTRs in gene expression regulation

I Pereira‐Castro, A Moreira - Wiley Interdisciplinary Reviews …, 2021 - Wiley Online Library
Messanger RNA (mRNA) isoforms with alternative 3′‐untranslated regions (3′‐UTRs) are
produced by alternative polyadenylation (APA), which occurs during transcription in most …

Emerging roles of RNA 3′-end cleavage and polyadenylation in pathogenesis, diagnosis and therapy of human disorders

J Nourse, S Spada, S Danckwardt - Biomolecules, 2020 - mdpi.com
A crucial feature of gene expression involves RNA processing to produce 3′ ends through
a process termed 3′ end cleavage and polyadenylation (CPA). This ensures the nascent …

Alternative polyadenylation: An enigma of transcript length variation in health and disease

NK Mohanan, F Shaji, GR Koshre… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Alternative polyadenylation (APA) is a molecular mechanism during a pre‐mRNA
processing that involves usage of more than one polyadenylation site (PA‐site) generating …

Dichotomous intronic polyadenylation profiles reveal multifaceted gene functions in the pan-cancer transcriptome

J Sun, JY Kim, S Jun, M Park, E de Jong… - … & Molecular Medicine, 2024 - nature.com
Alternative cleavage and polyadenylation within introns (intronic APA) generate shorter
mRNA isoforms; however, their physiological significance remains elusive. In this study, we …

A new story of the three magi: Scaffolding proteins and lncRNA suppressors of cancer

L Kotelevets, E Chastre - Cancers, 2021 - mdpi.com
Simple Summary MAGI1, 2, and 3 belong to a subgroup of the MAGUK family of scaffolding
proteins, and are comprised of 6 PDZ domains, 2 WW domains, and 1 GUK domain. MAGIs …

RECK isoforms have opposing effects on cell migration

HN Lee, M Mitra, O Bosompra, DC Corney… - Molecular biology of …, 2018 - Am Soc Cell Biol
Cell migration is a highly conserved process involving cytoskeletal reorganization and
restructuring of the surrounding extracellular matrix. Although there are many studies …

Peptides and combination of peptides and scaffolds for use in immunotherapy against renal cell carcinoma (RCC) and other cancers

M Andrea, T Weinschenk, O Schoor, J Fritsche… - US Patent …, 2018 - Google Patents
The present invention relates to peptides, proteins, nucleic acids and cells for use in
immunotherapeutic methods. In particular, the present invention relates to the …

The butterfly effect of RNA alterations on transcriptomic equilibrium

N Desi, Y Tay - Cells, 2019 - mdpi.com
Post-transcriptional regulation plays a key role in modulating gene expression, and the
perturbation of transcriptomic equilibrium has been shown to drive the development of …