Strategies to access biosynthetic novelty in bacterial genomes for drug discovery

F Hemmerling, J Piel - Nature Reviews Drug Discovery, 2022 - nature.com
Bacteria provide a rich source of natural products with potential therapeutic applications,
such as novel antibiotic classes or anticancer drugs. Bioactivity-guided screening of …

The evolution of genome mining in microbes–a review

N Ziemert, M Alanjary, T Weber - Natural product reports, 2016 - pubs.rsc.org
Covering: 2006 to 2016 The computational mining of genomes has become an important
part in the discovery of novel natural products as drug leads. Thousands of bacterial …

A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics

MS Donia, P Cimermancic, CJ Schulze, LCW Brown… - Cell, 2014 - cell.com
In complex biological systems, small molecules often mediate microbe-microbe and microbe-
host interactions. Using a systematic approach, we identified 3,118 small-molecule …

Computational approaches to natural product discovery

MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …

Heritable symbiosis: the advantages and perils of an evolutionary rabbit hole

GM Bennett, NA Moran - Proceedings of the National …, 2015 - National Acad Sciences
Many eukaryotes have obligate associations with microorganisms that are transmitted
directly between generations. A model for heritable symbiosis is the association of aphids, a …

Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms

LV Flórez, PHW Biedermann, T Engl… - Natural Product …, 2015 - pubs.rsc.org
Covering: through 2014 Many organisms team up with microbes for defense against
predators, parasites, parasitoids, or pathogens. Here we review the described protective …

Biosynthesis of polyketides by trans-AT polyketide synthases

EJN Helfrich, J Piel - Natural product reports, 2016 - pubs.rsc.org
Covering 2000 to June 2015 This review discusses the biosynthesis of natural products that
are generated by trans-AT polyketide synthases, a family of catalytically versatile enzymes …

Dynamics of insect–microbiome interaction influence host and microbial symbiont

A Gupta, S Nair - Frontiers in Microbiology, 2020 - frontiersin.org
Insects share an intimate relationship with their gut microflora and this symbiotic association
has developed into an essential evolutionary outcome intended for their survival through …

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

MJ Neave, A Apprill, C Ferrier-Pagès… - Applied microbiology and …, 2016 - Springer
Endozoicomonas bacteria are emerging as extremely diverse and flexible symbionts of
numerous marine hosts inhabiting oceans worldwide. Their hosts range from simple …

Secondary metabolism in the lichen symbiosis

MJ Calcott, DF Ackerley, A Knight… - Chemical Society …, 2018 - pubs.rsc.org
Lichens, which are defined by a core symbiosis between a mycobiont (fungal partner) and a
photobiont (photoautotrophic partner), are in fact complex assemblages of microorganisms …