A network-biology perspective of microRNA function and dysfunction in cancer

CP Bracken, HS Scott, GJ Goodall - Nature Reviews Genetics, 2016 - nature.com
MicroRNAs (miRNAs) participate in most aspects of cellular differentiation and homeostasis,
and consequently have roles in many pathologies, including cancer. These small non …

A brief history of synthetic biology

DE Cameron, CJ Bashor, JJ Collins - Nature Reviews Microbiology, 2014 - nature.com
The ability to rationally engineer microorganisms has been a long-envisioned goal dating
back more than a half-century. With the genomics revolution and rise of systems biology in …

[HTML][HTML] Roles for microRNAs in conferring robustness to biological processes

MS Ebert, PA Sharp - Cell, 2012 - cell.com
Biological systems use a variety of mechanisms to maintain their functions in the face of
environmental and genetic perturbations. Increasing evidence suggests that, among their …

[HTML][HTML] Cellular decision making and biological noise: from microbes to mammals

G Balázsi, A Van Oudenaarden, JJ Collins - Cell, 2011 - cell.com
Cellular decision making is the process whereby cells assume different, functionally
important and heritable fates without an associated genetic or environmental difference …

Functional roles for noise in genetic circuits

A Eldar, MB Elowitz - Nature, 2010 - nature.com
The genetic circuits that regulate cellular functions are subject to stochastic fluctuations, or
'noise', in the levels of their components. Noise, far from just a nuisance, has begun to be …

Cellular heterogeneity: do differences make a difference?

SJ Altschuler, LF Wu - Cell, 2010 - cell.com
A central challenge of biology is to understand how individual cells process information and
respond to perturbations. Much of our knowledge is based on ensemble measurements …

An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses

M Mann, A Mehta, JL Zhao, K Lee, GK Marinov… - Nature …, 2017 - nature.com
The innate inflammatory response must be tightly regulated to ensure effective immune
protection. NF-κB is a key mediator of the inflammatory response, and its dysregulation has …

Principles of maximum entropy and maximum caliber in statistical physics

S Pressé, K Ghosh, J Lee, KA Dill - Reviews of Modern Physics, 2013 - APS
The variational principles called maximum entropy (MaxEnt) and maximum caliber
(MaxCal)<? format?> are reviewed. MaxEnt originated in the statistical physics of Boltzmann …

Noise in biology

LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …

Single-cell-based analysis highlights a surge in cell-to-cell molecular variability preceding irreversible commitment in a differentiation process

A Richard, L Boullu, U Herbach, A Bonnafoux… - PLoS …, 2016 - journals.plos.org
In some recent studies, a view emerged that stochastic dynamics governing the switching of
cells from one differentiation state to another could be characterized by a peak in gene …