Concordance and discordance in the phylogenomics of the wrasses and parrotfishes (Teleostei: Labridae)

LC Hughes, CM Nash, WT White… - Systematic …, 2023 - academic.oup.com
Phylogenomic analysis of large genome-wide sequence data sets can resolve phylogenetic
tree topologies for large species groups, help test the accuracy of and improve resolution for …

The impact of paleoclimatic changes on body size evolution in marine fishes

EM Troyer, R Betancur-R, LC Hughes… - Proceedings of the …, 2022 - National Acad Sciences
Body size is an important species trait, correlating with life span, fecundity, and other
ecological factors. Over Earth's geological history, climate shifts have occurred, potentially …

Reduced evolutionary constraint accompanies ongoing radiation in deep-sea anglerfishes

EC Miller, R Faucher, PB Hart… - Nature Ecology & …, 2024 - nature.com
Colonization of a novel habitat is often followed by phenotypic diversification in the wake of
ecological opportunity. However, some habitats should be inherently more constraining than …

Comprehensive phenotypic phylogenetic analysis supports the monophyly of stromateiform fishes (Teleostei: Percomorphacea)

MNL Pastana, GD Johnson… - Zoological Journal of the …, 2022 - academic.oup.com
More than half the ray-finned fishes and about one-quarter of all living vertebrates belong to
Percomorphacea. Among its 30 orders, Stromateiformes encompass 77 species in 16 …

[PDF][PDF] Comparing ultraconserved elements and exons for phylogenomic analyses of Middle American cichlids: when data agree to disagree

F Alda, WB Ludt, DJ Elías, CD McMahan… - Genome Biology and …, 2021 - academic.oup.com
Choosing among types of genomic markers to be used in a phylogenomic study can have a
major influence on the cost, design, and results of a study. Yet few attempts have been made …

On the need for new measures of phylogenomic support

RC Thomson, JM Brown - Systematic Biology, 2022 - academic.oup.com
The scale of data sets used to infer phylogenies has grown dramatically in the last decades,
providing researchers with an enormous amount of information with which to draw …

Phylogenetic classification of living and fossil ray-finned fishes (Actinopterygii)

TJ Near, CE Thacker - Bulletin of the Peabody Museum of Natural History, 2024 - BioOne
Classification of the tremendous diversity of ray-finned fishes (Actinopterygii) began with the
designation of taxonomic groups on the basis of morphological similarity. Starting in the late …

Molecular phylogenies map to biogeography better than morphological ones

JW Oyston, M Wilkinson, M Ruta, MA Wills - Communications Biology, 2022 - nature.com
Phylogenetic relationships are inferred principally from two classes of data: morphological
and molecular. Currently, most phylogenies of extant taxa are inferred from molecules and …

Reassessing the evolutionary relationships of tropical wandering spiders using phylogenomics: A UCE-based phylogeny of Ctenidae (Araneae) with the discovery of …

NA Hazzi, HM Wood, G Hormiga - Molecular Phylogenetics and Evolution, 2025 - Elsevier
Tropical wandering spiders (Ctenidae) are a diverse family of cursorial predators whose
species richness peaks in the tropics. The phylogeny of Ctenidae has been examined using …

Resolving marine–freshwater transitions by diatoms through a fog of gene tree discordance

WR Roberts, EC Ruck, KM Downey, E Pinseel… - Systematic …, 2023 - academic.oup.com
Despite the obstacles facing marine colonists, most lineages of aquatic organisms have
colonized and diversified in freshwaters repeatedly. These transitions can trigger rapid …