Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison

B Song, F Li, Y Liu, X Zeng - Briefings in Bioinformatics, 2021 - academic.oup.com
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …

Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives

J Xu, P Yang, S Xue, B Sharma, M Sanchez-Martin… - Human genetics, 2019 - Springer
In the field of cancer genomics, the broad availability of genetic information offered by next-
generation sequencing technologies and rapid growth in biomedical publication has led to …

An extensive review of tools for manual annotation of documents

M Neves, J Ševa - Briefings in bioinformatics, 2021 - academic.oup.com
Motivation Annotation tools are applied to build training and test corpora, which are
essential for the development and evaluation of new natural language processing …

Data science, artificial intelligence, and machine learning: opportunities for laboratory medicine and the value of positive regulation

D Gruson, T Helleputte, P Rousseau, D Gruson - Clinical biochemistry, 2019 - Elsevier
Artificial intelligence (AI) and data science are rapidly developing in healthcare, as is their
translation into laboratory medicine. Our review article presents an overview of the data …

[HTML][HTML] Deep learning of histopathology images at the single cell level

K Lee, JH Lockhart, M Xie, R Chaudhary… - Frontiers in artificial …, 2021 - frontiersin.org
The tumor-immune microenvironment (TIME) encompasses many heterogeneous cell types
that engage in extensive crosstalk among the cancer, immune, and stromal components …

[HTML][HTML] AI and precision oncology in clinical cancer genomics: From prevention to targeted cancer therapies-an outcomes based patient care

Z Dlamini, A Skepu, N Kim, M Mkhabele… - Informatics in Medicine …, 2022 - Elsevier
Precision medicine is the personalization of medicine to suit a specific group of people or
even an individual patient, based on genetic or molecular profiling. This can be done using …

Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions

A Tolios, J De Las Rivas, E Hovig, P Trouillas… - Drug Resistance …, 2020 - Elsevier
Like physics in the 19th century, biology and molecular biology in particular, has been
fertilized and enhanced like few other scientific fields, by the incorporation of mathematical …

Scaling up data curation using deep learning: an application to literature triage in genomic variation resources

K Lee, ML Famiglietti, A McMahon… - PLoS computational …, 2018 - journals.plos.org
Manually curating biomedical knowledge from publications is necessary to build a
knowledge based service that provides highly precise and organized information to users …

ARPNet: antidepressant response prediction network for major depressive disorder

B Chang, Y Choi, M Jeon, J Lee, KM Han, A Kim… - Genes, 2019 - mdpi.com
Treating patients with major depressive disorder is challenging because it takes several
months for antidepressants prescribed for the patients to take effect. This limitation may …

[HTML][HTML] A primer on machine learning techniques for genomic applications

A Monaco, E Pantaleo, N Amoroso… - Computational and …, 2021 - Elsevier
High throughput sequencing technologies have enabled the study of complex biological
aspects at single nucleotide resolution, opening the big data era. The analysis of large …