Control of nitrogen fixation in bacteria that associate with cereals

MH Ryu, J Zhang, T Toth, D Khokhani, BA Geddes… - Nature …, 2020 - nature.com
Legumes obtain nitrogen from air through rhizobia residing in root nodules. Some species of
rhizobia can colonize cereals but do not fix nitrogen on them. Disabling native regulation …

IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions

M Mann, PR Wright, R Backofen - Nucleic acids research, 2017 - academic.oup.com
The IntaRNA algorithm enables fast and accurate prediction of RNA–RNA hybrids by
incorporating seed constraints and interaction site accessibility. Here, we introduce …

Riboregulation in bacteria: From general principles to novel mechanisms of the trp attenuator and its sRNA and peptide products

E Evguenieva‐Hackenberg - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Gene expression strategies ensuring bacterial survival and competitiveness rely on cis‐and
trans‐acting RNA‐regulators (riboregulators). Among the cis‐acting riboregulators are …

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

M Raden, SM Ali, OS Alkhnbashi, A Busch… - Nucleic acids …, 2018 - academic.oup.com
The Freiburg RNA tools webserver is a well established online resource for RNA-focused
research. It provides a unified user interface and comprehensive result visualization for …

Synthetic small RNAs: current status, challenges, and opportunities

S Patel, H Panchasara, D Braddick… - Journal of Cellular …, 2018 - Wiley Online Library
Small regulatory RNAs act at the levels of transcription, posttranscription, and translation,
with numerous roles that include binding to protein targets, protein modification, binding to …

Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans

H Melior, S Li, R Madhugiri, M Stötzel… - Nucleic acids …, 2019 - academic.oup.com
Ribosome-mediated transcription attenuation is a basic posttranscriptional regulation
mechanism in bacteria. Liberated attenuator RNAs arising in this process are generally …

The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNA sinI in Sinorhizobium meliloti

K Baumgardt, K Šmídová, H Rahn, G Lochnit… - RNA biology, 2016 - Taylor & Francis
Quorum sensing is a cell density-dependent communication system of bacteria relying on
autoinducer molecules. During the analysis of the post-transcriptional regulation of quorum …

Spatiotemporal choreography of chromosome and megaplasmids in the Sinorhizobium meliloti cell cycle

B Frage, J Döhlemann, M Robledo… - Molecular …, 2016 - Wiley Online Library
A considerable share of bacterial species maintains multipartite genomes. Precise
coordination of genome replication and segregation with cell growth and division is vital for …

Sinorhizobium meliloti YbeY is an endoribonuclease with unprecedented catalytic features, acting as silencing enzyme in riboregulation

M Saramago, A Peregrina, M Robledo… - Nucleic acids …, 2017 - academic.oup.com
Structural and biochemical features suggest that the almost ubiquitous bacterial YbeY
protein may serve catalytic and/or Hfq-like protective functions central to small RNA (sRNA) …

The Pseudomonas stutzeri-Specific Regulatory Noncoding RNA NfiS Targets katB mRNA Encoding a Catalase Essential for Optimal Oxidative Resistance and …

H Zhang, Y Zhan, Y Yan, Y Liu, G Hu… - Journal of …, 2019 - Am Soc Microbiol
Pseudomonas stutzeri A1501 is a versatile nitrogen-fixing bacterium capable of living in
diverse environments and coping with various oxidative stresses. NfiS, a regulatory …