The evolution of gene duplications: classifying and distinguishing between models

H Innan, F Kondrashov - Nature Reviews Genetics, 2010 - nature.com
Gene duplications and their subsequent divergence play an important part in the evolution
of novel gene functions. Several models for the emergence, maintenance and evolution of …

A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages

T Domazet-Lošo, J Brajković, D Tautz - Trends in Genetics, 2007 - cell.com
Macroevolutionary trends traditionally are studied by fossil analysis, comparative
morphology or evo-devo approaches. With the availability of genome sequences and …

Gene Family Evolution across 12 Drosophila Genomes

MW Hahn, MV Han, SG Han - PLoS genetics, 2007 - journals.plos.org
Comparison of whole genomes has revealed large and frequent changes in the size of gene
families. These changes occur because of high rates of both gene gain (via duplication) and …

Specialization can drive the evolution of modularity

C Espinosa-Soto, A Wagner - PLoS computational biology, 2010 - journals.plos.org
Organismal development and many cell biological processes are organized in a modular
fashion, where regulatory molecules form groups with many interactions within a group and …

Functional evolution of phosphatidylethanolamine binding proteins in soybean and Arabidopsis

Z Wang, Z Zhou, Y Liu, T Liu, Q Li, Y Ji, C Li… - The Plant …, 2015 - academic.oup.com
Gene duplication provides resources for novel gene functions. Identification of the amino
acids responsible for functional conservation and divergence of duplicated genes will …

[HTML][HTML] Chalcone synthase (CHS) family genes regulate the growth and response of cucumber (Cucumis sativus L.) to Botrytis cinerea and abiotic stresses

S Ahmad, S Ali, AZ Shah, A Khan, S Faria - Plant Stress, 2023 - Elsevier
The chalcone synthase (CHS) gene family is instrumental not only regulating plant growth
and development but fine-tuning plant response to environmental hazards. Despite the …

Genome-wide identification, characterization and expression analysis of the chalcone synthase family in maize

Y Han, T Ding, B Su, H Jiang - International journal of molecular sciences, 2016 - mdpi.com
Members of the chalcone synthase (CHS) family participate in the synthesis of a series of
secondary metabolites in plants, fungi and bacteria. The metabolites play important roles in …

[HTML][HTML] Genome-wide identification, characterization, and expression analysis of the Chalcone Synthase gene family in Oryza sativa under Abiotic Stresses

S Ahmad, M Jeridi, S Siddiqui, AZ Shah, S Ali - Plant Stress, 2023 - Elsevier
Chalcone synthase (CHS) is the pivotal enzyme that catalyzes the first committed step of the
phenylpropanoid pathway leading to flavonoids. Herein, we identified twenty-seven OsCHS …

Tree thinking for all biology: the problem with reading phylogenies as ladders of progress

KE Omland, LG Cook, MD Crisp - BioEssays, 2008 - Wiley Online Library
Phylogenies are increasingly prominent across all of biology, especially as DNA sequencing
makes more and more trees available. However, their utility is compromised by widespread …

Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana

C Zou, MD Lehti-Shiu, M Thomashow, SH Shiu - PLoS genetics, 2009 - journals.plos.org
Due to the selection pressure imposed by highly variable environmental conditions, stress
sensing and regulatory response mechanisms in plants are expected to evolve rapidly. One …