Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Modern Techniques in Colorado Potato Beetle (Leptinotarsa decemlineata Say) Control and Resistance Management: History Review and Future Perspectives

M Kadoić Balaško, KM Mikac, R Bažok, D Lemic - Insects, 2020 - mdpi.com
Simple Summary The Colorado potato beetle (CPB) is one of the most important potato pest
worldwide. It is native to US but during the 20th century it has dispersed through Europe …

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

SJ Zimmerman, CL Aldridge, SJ Oyler-McCance - BMC genomics, 2020 - Springer
Background Use of genomic tools to characterize wildlife populations has increased in
recent years. In the past, genetic characterization has been accomplished with more …

Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

MC Fischer, C Rellstab, M Leuzinger, M Roumet… - BMC genomics, 2017 - Springer
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …

Genetic Diversity and Population Structure of a Camelina sativa Spring Panel

Z Luo, J Brock, JM Dyer, T Kutchan… - Frontiers in plant …, 2019 - frontiersin.org
There is a need to explore renewable alternatives (eg, biofuels) that can produce energy
sources to help reduce the reliance on fossil oils. In addition, the consumption of fossil oils …

Field-evolved resistance to Bt maize by western corn rootworm

AJ Gassmann, JL Petzold-Maxwell, RS Keweshan… - PloS one, 2011 - journals.plos.org
Background Crops engineered to produce insecticidal toxins derived from the bacterium
Bacillus thuringiensis (Bt) are planted on millions of hectares annually, reducing the use of …

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms.

JE Seeb, G Carvalho, L Hauser… - Molecular ecology …, 2011 - search.ebscohost.com
An introduction to articles published within the issue is presented, including an approach to
discover single-nucleotide polymorphisms (SNP) for population genetics study of the ringed …

Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp, Carassius carassius, L.

DL Jeffries, GH Copp, L Lawson Handley… - Molecular …, 2016 - Wiley Online Library
The conservation of threatened species must be underpinned by phylogeographic
knowledge. This need is epitomized by the freshwater fish Carassius carassius, which is in …

Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci …

RGJ Hodel, S Chen, AC Payton, SF McDaniel… - Scientific Reports, 2017 - nature.com
The widespread adoption of RAD-Seq data in phylogeography means genealogical
relationships previously evaluated using relatively few genetic markers can now be …

A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus fruit trees' group (Citrinae, Rutaceae) and the …

A Garcia-Lor, F Curk, H Snoussi-Trifa… - Annals of …, 2013 - academic.oup.com
Abstract Background and Aims Despite differences in morphology, the genera representing
'true citrus fruit trees' are sexually compatible, and their phylogenetic relationships remain …