Multilayered regulation of developmentally programmed pre-anthesis tip degeneration of the barley inflorescence

N Shanmugaraj, J Rajaraman, S Kale, R Kamal… - The Plant …, 2023 - academic.oup.com
Leaf and floral tissue degeneration is a common feature in plants. In cereal crops such as
barley (Hordeum vulgare L.), pre-anthesis tip degeneration (PTD) starts with growth arrest of …

Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs

SL Dwivedi, LF Quiroz, ASN Reddy, C Spillane… - International Journal of …, 2023 - mdpi.com
Alternative splicing (AS) is a gene regulatory mechanism modulating gene expression in
multiple ways. AS is prevalent in all eukaryotes including plants. AS generates two or more …

GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation

B Contreras-Moreira, S Saraf, G Naamati, AM Casas… - Genome Biology, 2023 - Springer
Crop pangenomes made from individual cultivar assemblies promise easy access to
conserved genes, but genome content variability and inconsistent identifiers hamper their …

Identifying plant genes shaping microbiota composition in the barley rhizosphere

C Escudero-Martinez, M Coulter… - Nature …, 2022 - nature.com
A prerequisite to exploiting soil microbes for sustainable crop production is the identification
of the plant genes shaping microbiota composition in the rhizosphere, the interface between …

BarleyExpDB: an integrative gene expression database for barley

T Li, Y Li, H Shangguan, J Bian, R Luo, Y Tian, Z Li… - BMC Plant …, 2023 - Springer
Background RNA-sequencing (RNA-seq) has been widely used to study the dynamic
expression patterns of transcribed genes, which can lead to new biological insights …

Genomic resources for a historical collection of cultivated two-row European spring barley genotypes

M Schreiber, R Wonneberger, AM Haaning, M Coulter… - Scientific Data, 2024 - nature.com
Barley genomic resources are increasing rapidly, with the publication of a barley
pangenome as one of the latest developments. Two-row spring barley cultivars are intensely …

Multi-omics responses of barley seedlings to low and high linear energy transfer irradiation

P Volkova, A Prazyan, M Podlutskii, V Saburov… - Environmental and …, 2024 - Elsevier
Barley is a resilient crop with high nutritional value and adaptability, making it a promising
candidate for phytoremediation and space agriculture. The study presents a comprehensive …

Altered expression of a raspberry homologue of VRN1 is associated with disruption of dormancy induction and misregulation of subsets of dormancy-associated …

B Mateos, K Preedy, L Milne, J Morris… - Journal of …, 2024 - academic.oup.com
Winter dormancy is a key process in the phenology of temperate perennials. Climate change
is severely impacting its course leading to economic losses in agriculture. A better …

Mini review: Targeting below-ground plant performance to improve nitrogen use efficiency (NUE) in barley

C Huang, CR Butterly, D Moody… - Frontiers in …, 2023 - frontiersin.org
Nitrogen (N) fertilizer is one of the major inputs for grain crops including barley and its usage
is increasing globally. However, N use efficiency (NUE) is low in cereal crops, leading to …

A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity

W Guo, M Schreiber, V Marosi, P Bagnaresi… - 2024 - discovery.dundee.ac.uk
A pan-transcriptome describes the transcriptional and post-transcriptional consequences of
genome diversity from multiple individuals within a species, revealing an assortment of …