Do large language models understand chemistry? a conversation with chatgpt

CM Castro Nascimento… - Journal of Chemical …, 2023 - ACS Publications
Large language models (LLMs) have promised a revolution in answering complex questions
using the ChatGPT model. Its application in chemistry is still in its infancy. This viewpoint …

Mechanisms of intestinal pharmacokinetic natural product-drug interactions

VO Oyanna, JD Clarke - Drug Metabolism Reviews, 2024 - Taylor & Francis
The growing co-consumption of botanical natural products with conventional medications
has intensified the need to understand potential effects on drug safety and efficacy. This …

Theory and practice of coarse-grained molecular dynamics of biologically important systems

A Liwo, C Czaplewski, AK Sieradzan, AG Lipska… - Biomolecules, 2021 - mdpi.com
Molecular dynamics with coarse-grained models is nowadays extensively used to simulate
biomolecular systems at large time and size scales, compared to those accessible to all …

Martini 3 coarse-grained force field for cholesterol

L Borges-Araújo, AC Borges-Araújo… - Journal of Chemical …, 2023 - ACS Publications
Cholesterol plays a crucial role in biomembranes by regulating various properties, such as
fluidity, rigidity, permeability, and organization of lipid bilayers. The latest version of the …

Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment

A Antoniak, I Biskupek, KK Bojarski… - Journal of Molecular …, 2021 - Elsevier
Abstract The UNited RESidue (UNRES) force field was tested in the 14th Community Wide
Experiment on the Critical Assessment of Techniques for Protein Structure Prediction …

NeuM: A Neuron‐Selective Probe Incorporates into Live Neuronal Membranes via Enhanced Clathrin‐Mediated Endocytosis in Primary Neurons

Y Sung, L Gotina, KH Kim, JY Lee… - Angewandte Chemie …, 2024 - Wiley Online Library
The development of a small‐molecule probe designed to selectively target neurons would
enhance the exploration of intricate neuronal structures and functions. Among such probes …

Polymer-coated gold nanoparticles and polymeric nanoparticles as nanocarrier of the BP100 antimicrobial peptide through a lung surfactant model

FR Souza, F Fornasier, AS Carvalho, BM Silva… - Journal of Molecular …, 2020 - Elsevier
Pneumonia is caused by microorganisms that settle in the lungs, which may reach the
pulmonary alveoli and cause respiratory failure. Antibiotic treatments are the most used …

O2 permeability of lipid bilayers is low, but increases with membrane cholesterol

S Al-Samir, F Itel, J Hegermann, G Gros… - Cellular and Molecular …, 2021 - Springer
Oxygen on its transport route from lung to tissue mitochondria has to cross several cell
membranes. The permeability value of membranes for O 2 (P O2), although of fundamental …

The reconciliation between the experimental and calculated octanol-water partition coefficient of 1, 2-dipalmitoyl-sn-glycero-3-phosphatidylcholine using atomistic …

RKM Costa, LMP Souza, RS Silva… - Journal of …, 2023 - Taylor & Francis
The octanol-water partition coefficient of 1, 2-dipalmitoyl-sn-glycero-3-phosphatidylcholine
(DPPC) was investigated using atomistic molecular dynamics simulations via …

DNA-empowered synthetic cells as minimalistic life forms

A Samanta, L Baranda Pellejero, M Masukawa… - Nature Reviews …, 2024 - nature.com
Cells, the fundamental units of life, orchestrate intricate functions—motility, adaptation,
replication, communication, and self-organization within tissues. Originating from …