A survey on applications of deep learning in microscopy image analysis

Z Liu, L Jin, J Chen, Q Fang, S Ablameyko, Z Yin… - Computers in biology …, 2021 - Elsevier
Advanced microscopy enables us to acquire quantities of time-lapse images to visualize the
dynamic characteristics of tissues, cells or molecules. Microscopy images typically vary in …

Use of artificial intelligence in diagnosis of head and neck precancerous and cancerous lesions: a systematic review

H Mahmood, M Shaban, BI Indave, AR Santos-Silva… - Oral Oncology, 2020 - Elsevier
This systematic review analyses and describes the application and diagnostic accuracy of
Artificial Intelligence (AI) methods used for detection and grading of potentially malignant …

Cellpose 2.0: how to train your own model

M Pachitariu, C Stringer - Nature methods, 2022 - nature.com
Pretrained neural network models for biological segmentation can provide good out-of-the-
box results for many image types. However, such models do not allow users to adapt the …

Cellpose: a generalist algorithm for cellular segmentation

C Stringer, T Wang, M Michaelos, M Pachitariu - Nature methods, 2021 - nature.com
Many biological applications require the segmentation of cell bodies, membranes and nuclei
from microscopy images. Deep learning has enabled great progress on this problem, but …

Hover-net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images

S Graham, QD Vu, SEA Raza, A Azam, YW Tsang… - Medical image …, 2019 - Elsevier
Nuclear segmentation and classification within Haematoxylin & Eosin stained histology
images is a fundamental prerequisite in the digital pathology work-flow. The development of …

Lizard: A large-scale dataset for colonic nuclear instance segmentation and classification

S Graham, M Jahanifar, A Azam… - Proceedings of the …, 2021 - openaccess.thecvf.com
The development of deep segmentation models for computational pathology (CPath) can
help foster the investigation of interpretable morphological biomarkers. Yet, there is a major …

Geospatial immune variability illuminates differential evolution of lung adenocarcinoma

K AbdulJabbar, SEA Raza, R Rosenthal… - Nature medicine, 2020 - nature.com
Remarkable progress in molecular analyses has improved our understanding of the
evolution of cancer cells toward immune escape,,,–. However, the spatial configurations of …

Cross-patch dense contrastive learning for semi-supervised segmentation of cellular nuclei in histopathologic images

H Wu, Z Wang, Y Song, L Yang… - Proceedings of the IEEE …, 2022 - openaccess.thecvf.com
We study the semi-supervised learning problem, using a few labeled data and a large
amount of unlabeled data to train the network, by developing a cross-patch dense …

NucleiSegNet: Robust deep learning architecture for the nuclei segmentation of liver cancer histopathology images

S Lal, D Das, K Alabhya, A Kanfade, A Kumar… - Computers in Biology …, 2021 - Elsevier
The nuclei segmentation of hematoxylin and eosin (H&E) stained histopathology images is
an important prerequisite in designing a computer-aided diagnostics (CAD) system for …

[HTML][HTML] Cellvit: Vision transformers for precise cell segmentation and classification

F Hörst, M Rempe, L Heine, C Seibold, J Keyl… - Medical Image …, 2024 - Elsevier
Nuclei detection and segmentation in hematoxylin and eosin-stained (H&E) tissue images
are important clinical tasks and crucial for a wide range of applications. However, it is a …