RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences

A Agapov, A Olina, A Kulbachinskiy - Nucleic Acids Research, 2022 - academic.oup.com
Cellular DNA is continuously transcribed into RNA by multisubunit RNA polymerases
(RNAPs). The continuity of transcription can be disrupted by DNA lesions that arise from the …

Molecular basis for damage recognition and verification by XPC-RAD23B and TFIIH in nucleotide excision repair

H Mu, NE Geacintov, S Broyde, JE Yeo, OD Schärer - DNA repair, 2018 - Elsevier
Global genome nucleotide excision repair (GG-NER) is the main pathway for the removal of
bulky lesions from DNA and is characterized by an extraordinarily wide substrate specificity …

Duplex sequencing identifies genomic features that determine susceptibility to benzo (a) pyrene-induced in vivo mutations

DPM LeBlanc, M Meier, FY Lo, E Schmidt… - BMC genomics, 2022 - Springer
Exposure to environmental mutagens increases the risk of cancer and genetic disorders. We
used Duplex Sequencing (DS), a high-accuracy error-corrected sequencing technology, to …

Duplex sequencing provides detailed characterization of mutation frequencies and spectra in the bone marrow of MutaMouse males exposed to procarbazine …

AE Dodge, DPM LeBlanc, G Zhou, A Williams… - Archives of …, 2023 - Springer
Mutagenicity testing is an essential component of health safety assessment. Duplex
Sequencing (DS), an emerging high-accuracy DNA sequencing technology, may provide …

Repair-resistant DNA lesions

NE Geacintov, S Broyde - Chemical research in toxicology, 2017 - ACS Publications
The eukaryotic global genomic nucleotide excision repair (GG-NER) pathway is the major
mechanism that removes most bulky and some nonbulky lesions from cellular DNA. There is …

Nucleotide excision repair of abasic DNA lesions

N Kitsera, M Rodriguez-Alvarez, S Emmert… - Nucleic Acids …, 2019 - academic.oup.com
Apurinic/apyrimidinic (AP) sites are a class of highly mutagenic and toxic DNA lesions
arising in the genome from a number of exogenous and endogenous sources. Repair of AP …

The torpedo effect in Bacillus subtilis: RNase J1 resolves stalled transcription complexes

M Šiková, J Wiedermannová, M Převorovský… - The EMBO …, 2020 - embopress.org
RN ase J1 is the major 5′‐to‐3′ bacterial exoribonuclease. We demonstrate that in its
absence, RNA polymerases (RNAP s) are redistributed on DNA, with increased RNAP …

The cyclopurine deoxynucleosides: DNA repair, biological effects, mechanistic insights, and unanswered questions

PJ Brooks - Free Radical Biology and Medicine, 2017 - Elsevier
Patients with the genetic disease xeroderma pigmentosum (XP) who lack the capacity to
carry out nucleotides excision repair (NER) have a dramatically elevated risk of skin cancer …

The m6A reader YTHDC2 regulates UVB‐induced DNA damage repair and histone modification

Z Yang, M Verghese, S Yang, P Shah… - Photochemistry and …, 2024 - Wiley Online Library
Ultraviolet B (UVB) radiation represents a major carcinogen for the development of all skin
cancer types. Mechanistically, UVB induces damage to DNA in the form of lesions, including …

O6-methylguanine–induced transcriptional mutagenesis reduces p53 tumor-suppressor function

M Ezerskyte, JA Paredes, S Malvezzi… - Proceedings of the …, 2018 - National Acad Sciences
Altered protein function due to mutagenesis plays an important role in disease development.
This is perhaps most evident in tumorigenesis and the associated loss or gain of function of …