Efficient elimination of MELAS-associated m. 3243G mutant mitochondrial DNA by an engineered mitoARCUS nuclease

WK Shoop, J Lape, M Trum, A Powell, E Sevigny… - Nature …, 2023 - nature.com
Nuclease-mediated editing of heteroplasmic mitochondrial DNA (mtDNA) seeks to
preferentially cleave and eliminate mutant mtDNA, leaving wild-type genomes to repopulate …

Applications of alternative nucleases in the age of CRISPR/Cas9

TK Guha, DR Edgell - International journal of molecular sciences, 2017 - mdpi.com
Breakthroughs in the development of programmable site-specific nucleases, including zinc-
finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) …

Redesign of extensive protein–DNA interfaces of meganucleases using iterative cycles of in vitro compartmentalization

R Takeuchi, M Choi… - Proceedings of the …, 2014 - National Acad Sciences
LAGLIDADG homing endonucleases (meganucleases) are sequence-specific DNA
cleavage enzymes used for genome engineering. Recently, meganucleases fused to …

Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases

TA McMurrough, CM Brown, K Zhang… - Nucleic Acids …, 2018 - academic.oup.com
LAGLIDADG homing endonucleases (meganucleases) are site-specific mobile
endonucleases that can be adapted for genome-editing applications. However, one problem …

[PDF][PDF] BuD, a helix–loop–helix DNA-binding domain for genome modification

S Stella, R Molina, B López-Méndez… - … Section D: Biological …, 2014 - journals.iucr.org
DNA editing offers new possibilities in synthetic biology and biomedicine for modulation or
modification of cellular functions to organisms. However, inaccuracy in this process may …

[HTML][HTML] Structure of the AvrBs3–DNA complex provides new insights into the initial thymine-recognition mechanism

S Stella, R Molina, I Yefimenko, J Prieto… - … Section D: Biological …, 2013 - scripts.iucr.org
Transcription activator-like effectors contain a DNA-binding domain organized in tandem
repeats. The repeats include two adjacent residues known as the repeat variable di-residue …

Reprogramming homing endonuclease specificity through computational design and directed evolution

SB Thyme, SJS Boissel, S Arshiya Quadri… - Nucleic acids …, 2014 - academic.oup.com
Homing endonucleases (HEs) can be used to induce targeted genome modification to
reduce the fitness of pathogen vectors such as the malaria-transmitting Anopheles gambiae …

5′-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases

J Valton, F Daboussi, S Leduc, R Molina… - Journal of Biological …, 2012 - ASBMB
In this study, we asked whether CpG methylation could influence the DNA binding affinity
and activity of meganucleases used for genome engineering applications. A combination of …

Understanding the indirect DNA read-out specificity of I-CreI Meganuclease

J Prieto, P Redondo, B López-Méndez, M D'Abramo… - Scientific Reports, 2018 - nature.com
The high DNA specificity of homing endonucleases makes them a powerful protein scaffold
to engineer enzymes for genome manipulation. Understanding their molecular recognition …

Engineering of customized meganucleases via in vitro compartmentalization and in cellulo optimization

R Takeuchi, M Choi, BL Stoddard - Chromosomal mutagenesis, 2015 - Springer
LAGLIDADG homing endonucleases (also referred to as “meganucleases”) are compact
DNA cleaving enzymes that specifically recognize long target sequences (approximately 20 …