Genome-wide association studies for common diseases and complex traits

JN Hirschhorn, MJ Daly - Nature reviews genetics, 2005 - nature.com
Genetic factors strongly affect susceptibility to common diseases and also influence disease-
related quantitative traits. Identifying the relevant genes has been difficult, in part because …

Haplotype blocks and linkage disequilibrium in the human genome

JD Wall, JK Pritchard - Nature Reviews Genetics, 2003 - nature.com
There is great interest in the patterns and extent of linkage disequilibrium (LD) in humans
and other species. Characterizing LD is of central importance for gene-mapping studies and …

Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium

CS Carlson, MA Eberle, MJ Rieder, Q Yi… - The American Journal of …, 2004 - cell.com
Common genetic polymorphisms may explain a portion of the heritable risk for common
diseases. Within candidate genes, the number of common polymorphisms is finite, but direct …

[图书][B] Handbook of approximation algorithms and metaheuristics

TF Gonzalez - 2007 - taylorfrancis.com
Delineating the tremendous growth in this area, the Handbook of Approximation Algorithms
and Metaheuristics covers fundamental, theoretical topics as well as advanced, practical …

Gene hunting with hidden Markov model knockoffs

M Sesia, C Sabatti, EJ Candès - Biometrika, 2019 - academic.oup.com
Modern scientific studies often require the identification of a subset of explanatory variables.
Several statistical methods have been developed to automate this task, and the framework …

Application of association mapping to understanding the genetic diversity of plant germplasm resources

IY Abdurakhmonov… - International journal of …, 2008 - Wiley Online Library
Compared to the conventional linkage mapping, linkage disequilibrium (LD)‐mapping,
using the nonrandom associations of loci in haplotypes, is a powerful high‐resolution …

The role of haplotypes in candidate gene studies

AG Clark - Genetic Epidemiology: The Official Publication of the …, 2004 - Wiley Online Library
Human geneticists working on systems for which it is possible to make a strong case for a
set of candidate genes face the problem of whether it is necessary to consider the variation …

Partition-ligation–expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms

ZS Qin, T Niu, JS Liu - The American Journal of Human Genetics, 2002 - cell.com
The mapping of SNPs in human genomes has generated a lot of interest from both the
biomedical research community and industry. In conjunction with SNP mapping, researchers …

Robust inference with knockoffs

RF Barber, EJ Candès, RJ Samworth - The Annals of Statistics, 2020 - JSTOR
We consider the variable selection problem, which seeks to identify important variables
influencing a response Y out of many candidate features X ₁,..., Xp. We wish to do so while …

Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power

JM Chapman, JD Cooper, JA Todd, DG Clayton - Human heredity, 2003 - karger.com
In the 'indirect'method of detecting genetic associations between a trait and a DNA variant,
we type several markers in a gene or chromosome region of linkage disequilibrium. If there …