Artificial intelligence in plant breeding

MA Farooq, S Gao, MA Hassan, Z Huang, A Rasheed… - Trends in Genetics, 2024 - cell.com
Harnessing cutting-edge technologies to enhance crop productivity is a pivotal goal in
modern plant breeding. Artificial intelligence (AI) is renowned for its prowess in big data …

At the roots of chocolate: understanding and optimizing the cacao root-associated microbiome for ecosystem services. A review

JE Schmidt, A DuVal, ME Isaac, P Hohmann - Agronomy for Sustainable …, 2022 - Springer
Crop root-associated microbiomes have been heralded for their potential to improve plant
health and productivity. Optimizing beneficial interactions with rhizosphere microorganisms …

Three de novo assembled wild cacao genomes from the Upper Amazon

O Nousias, J Zheng, T Li, LW Meinhardt, B Bailey… - Scientific Data, 2024 - nature.com
Theobroma cacao, the chocolate tree, is indigenous to the Amazon basin, the greatest
biodiversity hotspot on earth. Recent advancement in plant genomics highlights the …

Prediction of Cacao (Theobroma cacao) Resistance to Moniliophthora spp. Diseases via Genome-Wide Association Analysis and Genomic Selection

MS McElroy, AJR Navarro, G Mustiga, C Stack… - Frontiers in plant …, 2018 - frontiersin.org
Cacao (Theobroma cacao) is a globally important crop, and its yield is severely restricted by
disease. Two of the most damaging diseases, witches' broom disease (WBD) and frosty pod …

Cacao (Theobroma cacao L.) Response to Water Stress: Physiological Characterization and Antioxidant Gene Expression Profiling in Commercial Clones

MA Osorio Zambrano, DA Castillo… - Frontiers in Plant …, 2021 - frontiersin.org
The increase in events associated with drought constraints plant growth and crop
performance. Cacao (Theobroma cacao L.) is sensitive to water deficit stress (DS), which …

Genetic Parameters and the Impact of Off-Types for Theobroma cacao L. in a Breeding Program in Brazil

A DuVal, SA Gezan, G Mustiga, C Stack… - Frontiers in Plant …, 2017 - frontiersin.org
Breeding programs of cacao (Theobroma cacao L.) trees share the many challenges of
breeding long-living perennial crops, and genetic progress is further constrained by both the …

Genome-wide association study reveals novel candidate genes associated with productivity and disease resistance to Moniliophthora spp. in cacao (Theobroma …

JA Osorio-Guarín, JA Berdugo-Cely… - G3: Genes …, 2020 - academic.oup.com
Abstract Cacao (Theobroma cacao L.), the source of chocolate, is one of the most important
commodity products worldwide that helps improve the economic livelihood of farmers …

Favorable conditions for genomic evaluation to outperform classical pedigree evaluation highlighted by a proof-of-concept study in poplar

M Pégard, V Segura, F Muñoz, C Bastien… - Frontiers in plant …, 2020 - frontiersin.org
Forest trees like poplar are particular in many ways compared to other domesticated
species. They have long juvenile phases, ongoing crop-wild gene flow, extensive …

Transformative changes in tree breeding for resilient forest restoration

D Ray, M Berlin, R Alia, L Sanchez… - Frontiers in Forests …, 2022 - frontiersin.org
Deciding how to establish woodland in forest restoration is not straightforward as different
outcomes may be obtained from different establishment approaches, each with cost …

SNP markers associated with resistance to frosty pod and black pod rot diseases in an F1 population of Theobroma cacao L.

OA Gutiérrez, AS Puig, W Phillips-Mora… - Tree Genetics & …, 2021 - Springer
Economically, cacao (Theobroma cacao L.) is a major tropical commodity for the Americas;
however, severe losses due to Moniliophthora roreri (Cif. and Par.), which causes frosty pod …