Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

[HTML][HTML] Graph neural networks: A review of methods and applications

J Zhou, G Cui, S Hu, Z Zhang, C Yang, Z Liu, L Wang… - AI open, 2020 - Elsevier
Lots of learning tasks require dealing with graph data which contains rich relation
information among elements. Modeling physics systems, learning molecular fingerprints …

Temporal graph benchmark for machine learning on temporal graphs

S Huang, F Poursafaei, J Danovitch… - Advances in …, 2024 - proceedings.neurips.cc
Abstract We present the Temporal Graph Benchmark (TGB), a collection of challenging and
diverse benchmark datasets for realistic, reproducible, and robust evaluation of machine …

ROLAND: graph learning framework for dynamic graphs

J You, T Du, J Leskovec - Proceedings of the 28th ACM SIGKDD …, 2022 - dl.acm.org
Graph Neural Networks (GNNs) have been successfully applied to many real-world static
graphs. However, the success of static graphs has not fully translated to dynamic graphs due …

Temporal graph networks for deep learning on dynamic graphs

E Rossi, B Chamberlain, F Frasca, D Eynard… - arXiv preprint arXiv …, 2020 - arxiv.org
Graph Neural Networks (GNNs) have recently become increasingly popular due to their
ability to learn complex systems of relations or interactions arising in a broad spectrum of …

A novel approach to large-scale dynamically weighted directed network representation

X Luo, H Wu, Z Wang, J Wang… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
A d ynamically w eighted d irected n etwork (DWDN) is frequently encountered in various big
data-related applications like a terminal interaction pattern analysis system (TIPAS) …

Measuring and relieving the over-smoothing problem for graph neural networks from the topological view

D Chen, Y Lin, W Li, P Li, J Zhou, X Sun - Proceedings of the AAAI …, 2020 - aaai.org
Abstract Graph Neural Networks (GNNs) have achieved promising performance on a wide
range of graph-based tasks. Despite their success, one severe limitation of GNNs is the over …

Handling distribution shifts on graphs: An invariance perspective

Q Wu, H Zhang, J Yan, D Wipf - arXiv preprint arXiv:2202.02466, 2022 - arxiv.org
There is increasing evidence suggesting neural networks' sensitivity to distribution shifts, so
that research on out-of-distribution (OOD) generalization comes into the spotlight …

Computing graph neural networks: A survey from algorithms to accelerators

S Abadal, A Jain, R Guirado, J López-Alonso… - ACM Computing …, 2021 - dl.acm.org
Graph Neural Networks (GNNs) have exploded onto the machine learning scene in recent
years owing to their capability to model and learn from graph-structured data. Such an ability …

[图书][B] Deep learning on graphs

Y Ma, J Tang - 2021 - books.google.com
Deep learning on graphs has become one of the hottest topics in machine learning. The
book consists of four parts to best accommodate our readers with diverse backgrounds and …