Toward precision medicine: building a knowledge network for biomedical research and a new taxonomy of disease

National Research Council, Division on Earth… - 2011 - books.google.com
Motivated by the explosion of molecular data on humans-particularly data associated with
individual patients-and the sense that there are large, as-yet-untapped opportunities to use …

Molecular genetic testing and the future of clinical genomics

SH Katsanis, N Katsanis - Nature Reviews Genetics, 2013 - nature.com
Genomic technologies are reaching the point of being able to detect genetic variation in
patients at high accuracy and reduced cost, offering the promise of fundamentally altering …

A systematic survey of loss-of-function variants in human protein-coding genes

DG MacArthur, S Balasubramanian, A Frankish… - Science, 2012 - science.org
Genome-sequencing studies indicate that all humans carry many genetic variants predicted
to cause loss of function (LoF) of protein-coding genes, suggesting unexpected redundancy …

Next-generation diagnostics and disease-gene discovery with the Exomiser

D Smedley, JOB Jacobsen, M Jäger, S Köhler… - Nature protocols, 2015 - nature.com
Exomiser is an application that prioritizes genes and variants in next-generation sequencing
(NGS) projects for novel disease-gene discovery or differential diagnostics of Mendelian …

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

X Huang, Y Zhao, X Wei, C Li, A Wang, Q Zhao, W Li… - Nature …, 2012 - nature.com
A high-density haplotype map recently enabled a genome-wide association study (GWAS)
in a population of indica subspecies of Chinese rice landraces. Here we extend this …

Modernizing reference genome assemblies

DM Church, VA Schneider, T Graves, K Auger… - PLoS …, 2011 - journals.plos.org
The availability of a high quality human genome assembly has revolutionized biomedical
research. Genomics has now entered the realm of clinical genetics, with many groups using …

[PDF][PDF] Reliable identification of genomic variants from RNA-seq data

R Piskol, G Ramaswami, JB Li - The American Journal of Human Genetics, 2013 - cell.com
Identifying genomic variation is a crucial step for unraveling the relationship between
genotype and phenotype and can yield important insights into human diseases. Prevailing …

Improved exome prioritization of disease genes through cross-species phenotype comparison

PN Robinson, S Köhler, A Oellrich, K Wang… - Genome …, 2014 - genome.cshlp.org
Numerous new disease-gene associations have been identified by whole-exome
sequencing studies in the last few years. However, many cases remain unsolved due to the …

[HTML][HTML] Cold Urticaria, Immunodeficiency, and Autoimmunity Related to PLCG2 Deletions

MJ Ombrello, EF Remmers, G Sun… - … England Journal of …, 2012 - Mass Medical Soc
Background Mendelian analysis of disorders of immune regulation can provide insight into
molecular pathways associated with host defense and immune tolerance. Methods We …

The role of replicates for error mitigation in next-generation sequencing

K Robasky, NE Lewis, GM Church - Nature Reviews Genetics, 2014 - nature.com
Advances in next-generation sequencing (NGS) technologies have rapidly improved
sequencing fidelity and substantially decreased sequencing error rates. However, given that …