What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age

N Gabed, F Verret, A Peticca, I Kryvoruchko… - Marine Drugs, 2022 - mdpi.com
The marine pennate diatom Haslea ostrearia has long been known for its characteristic blue
pigment marennine, which is responsible for the greening of invertebrate gills, a natural …

metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data

H Zafeiropoulos, M Beracochea, S Ninidakis… - …, 2023 - academic.oup.com
Abstract Background Genomic Observatories (GOs) are sites of long-term scientific study
that undertake regular assessments of the genomic biodiversity. The European Marine …

PREGO: a literature and data-mining resource to associate microorganisms, biological processes, and environment types

H Zafeiropoulos, S Paragkamian, S Ninidakis… - Microorganisms, 2022 - mdpi.com
To elucidate ecosystem functioning, it is fundamental to recognize what processes occur in
which environments (where) and which microorganisms carry them out (who). Here, we …

Linkage mapping, comparative genome analysis, and QTL detection for growth in a non-model teleost, the meagre Argyrosomus regius, using ddRAD sequencing

O Nousias, S Oikonomou, T Manousaki… - Scientific Reports, 2022 - nature.com
Meagre (Argyrosomus regius), is a benthopelagic species rapidly emerging in aquaculture,
due to its low food to biomass conversion rate, good fillet yield and ease of production …

Population genomics unveils the century-old invasion of the Seagrass Halophila stipulacea in the Mediterranean Sea

CA García-Escudero, CS Tsigenopoulos, T Manousaki… - Marine Biology, 2024 - Springer
The tropical seagrass Halophila stipulacea invaded the Eastern Mediterranean Sea in the
late nineteenth century and progressively spread throughout the basin ever since. Its spread …

[HTML][HTML] Phytoplankton community composition in relation to environmental variability in the Urdaibai estuary (SE Bay of Biscay): Microscopy and eDNA …

J Bilbao, C Pavloudi, E Blanco-Rayón, J Franco… - Marine Environmental …, 2023 - Elsevier
Phytoplankton monitoring is essential for the global understanding of aquatic ecosystems.
The present research studies the phytoplankton community of the Urdaibai estuary …

A Long‐Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS‐MBON 2018–2020

N Daraghmeh, K Exter, J Pagnier… - Molecular Ecology …, 2024 - Wiley Online Library
Molecular methods such as DNA/eDNA metabarcoding have emerged as useful tools to
document the biodiversity of complex communities over large spatio‐temporal scales. We …

Chromosome genome assembly for the meagre, Argyrosomus regius, reveals species adaptations and sciaenid sex-related locus evolution

V Papadogiannis, T Manousaki, O Nousias… - Frontiers in …, 2023 - frontiersin.org
The meagre, Argyrosomus regius, has recently become a species of increasing economic
interest for the Mediterranean aquaculture and there is ongoing work to boost production …

[PDF][PDF] The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data

H Zafeiropoulos, L Gargan… - MBMG …, 2021 - pdfs.semanticscholar.org
The mitochondrial cytochrome C oxidase subunit I gene (COI) is commonly used in
environmental DNA (eDNA) metabarcoding studies, especially for assessing metazoan …

Sardines at a junction: Seascape genomics reveals ecological and oceanographic drivers of variation in the NW Mediterranean Sea

A Antoniou, T Manousaki, F Ramírez… - Molecular …, 2023 - Wiley Online Library
By evaluating genetic variation across the entire genome, one can address existing
questions in a novel way while raising new ones. The latter includes how different local …