Accelerating AutoDock4 with GPUs and Gradient-Based Local Search

D Santos-Martins, L Solis-Vasquez… - Journal of chemical …, 2021 - ACS Publications
AutoDock4 is a widely used program for docking small molecules to macromolecular targets.
It describes ligand–receptor interactions using a physics-inspired scoring function that has …

X-centric: a survey on compute-, memory-and application-centric computer architectures

S Rheindt, T Sabirov, O Lenke, T Wild… - Proceedings of the …, 2020 - dl.acm.org
Big Data and machine learning constitute the multifaceted challenge of computer
engineering in the past decade. The meaningful processing of vast amounts of unstructured …

[HTML][HTML] Developing performance portable plasma edge simulations: A survey

SA Wright, CP Ridgers, GR Mudalige, Z Lantra… - Computer Physics …, 2024 - Elsevier
Heterogeneous architectures are increasingly common in modern High-Performance
Computing (HPC) systems. Achieving high-performance on such heterogeneous systems …

Paving the way towards high-level parallel pattern interfaces for data stream processing

D del Rio Astorga, MF Dolz, J Fernández… - Future Generation …, 2018 - Elsevier
The emergence of the Internet of Things (IoT) data stream applications has posed a number
of new challenges to existing infrastructures, processing engines, and programming models …

Parallelization of array method with hybrid programming: OpenMP and MPI

A Velarde Martínez - Applied Sciences, 2022 - mdpi.com
For parallelization of applications with high processing times and large amounts of storage
in High Performance Computing (HPC) systems, shared memory programming and …

[HTML][HTML] Implementation of a GPU-enhanced multiclass soil erosion model based on the 2D shallow water equations in the software Iber

L Cea, O García-Feal, G Nord, G Piton… - … Modelling & Software, 2024 - Elsevier
We present the implementation of a new fully distributed multiclass soil erosion module. The
model is based on a 2D finite volume solver (Iber+) for the 2D shallow water equations that …

[HTML][HTML] A Novel Method for Aircraft Structural Dynamic Strain Trend Signal Processing via Optimized Parallel Computing

Y Tian, F Zhang, J Jiang, Z Fan - Applied Sciences, 2024 - mdpi.com
In this study, we investigate the underlying causes of drift in the time history curves of
measured parameters obtained through strain electrical measurements and assess their …

Computer vision on the GPU—tools, algorithms and frameworks

H Fassold - 2016 IEEE 20th Jubilee International Conference …, 2016 - ieeexplore.ieee.org
In recent years, graphic processing units (GPUs) have emerged as an attractive alternative
to CPUs for implementing algorithms in a wide range of applications. The focus of this work …

Dataflow management, dynamic load balancing, and concurrent processing for real‐time embedded vision applications using Quasar

B Goossens - International Journal of Circuit Theory and …, 2018 - Wiley Online Library
Programming modern embedded vision systems brings various challenges, due to the steep
learning curve for programmers and the different characteristics of the devices. Quasar, a …

[PDF][PDF] Language run-time systems: an overview

E Belikov - 2015 Imperial College Computing Student Workshop …, 2015 - drops.dagstuhl.de
The proliferation of high-level programming languages with advanced language features
and the need for portability across increasingly heterogeneous and hierarchical …