Explorer: efficient DNA coding by De Bruijn graph toward arbitrary local and global biochemical constraints

C Dou, Y Yang, F Zhu, BZ Li… - Briefings in …, 2024 - academic.oup.com
With the exponential growth of digital data, there is a pressing need for innovative storage
media and techniques. DNA molecules, due to their stability, storage capacity, and density …

Optimal reference for DNA synthesis

O Elishco, W Huleihel - IEEE Transactions on Information …, 2023 - ieeexplore.ieee.org
In recent years, DNA has emerged as a potentially viable storage technology. DNA
synthesis, which refers to the task of writing the data into DNA, is perhaps the most costly …

Sequence design and reconstruction under the repeat channel in enzymatic DNA synthesis

R Shafir, O Sabary, L Anavy, E Yaakobi… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
Using synthetic DNA for data storage and for physical information encoding in labeling,
tracing, and authentication applications is becoming more feasible as synthesis and reading …

On the Long-Term behavior of -tuples Frequencies in Mutation Systems

O Elishco - arXiv preprint arXiv:2401.04020, 2024 - arxiv.org
In response to the evolving landscape of data storage, researchers have increasingly
explored non-traditional platforms, with DNA-based storage emerging as a cutting-edge …

Studying the Cycle Complexity of DNA Synthesis

A Zrihan, E Yaakobi, Z Yakhini - 2024 IEEE Information Theory …, 2024 - ieeexplore.ieee.org
Storing data in DNA is being explored as an efficient solution for archiving and in-object
storage. Synthesis time and cost remain challenging, significantly limiting some applications …

Bounds on Size of Homopolymer Free Codes

KG Benerjee, A Banerjee - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
For any given alphabet of size q, a Homopolymer Free code (HF code) refers to an (n, M, d)
q code of length n, size M and minimum Hamming distance d, where all the codewords are …