Emergence and developmental roles of the cerebrospinal fluid system

RM Fame, MK Lehtinen - Developmental cell, 2020 - cell.com
We summarize recent work illuminating how cerebrospinal fluid (CSF) regulates brain
function. More than a protective fluid cushion and sink for waste, the CSF is an integral CNS …

The acute stress response in the multiomic era

A Floriou-Servou, L von Ziegler, R Waag, C Schläppi… - Biological …, 2021 - Elsevier
Studying the stress response is a major pillar of neuroscience research not only because
stress is a daily reality but also because the exquisitely fine-tuned bodily changes triggered …

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics

KD Harris, H Hochgerner, NG Skene, L Magno… - PLoS …, 2018 - journals.plos.org
Understanding any brain circuit will require a categorization of its constituent neurons. In
hippocampal area CA1, at least 23 classes of GABAergic neuron have been proposed to …

Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus

J Fernandez-Albert, M Lipinski… - Nature …, 2019 - nature.com
Activity-driven transcription plays an important role in many brain processes, including those
underlying memory and epilepsy. Here we combine genetic tagging of nuclei and ribosomes …

Activity-dependent translation dynamically alters the proteome of the perisynaptic astrocyte process

D Sapkota, MSJ Kater, K Sakers, KR Nygaard, Y Liu… - Cell reports, 2022 - cell.com
Within eukaryotic cells, translation is regulated independent of transcription, enabling
nuanced, localized, and rapid responses to stimuli. Neurons respond transcriptionally and …

Translation of neutrally evolving peptides provides a basis for de novo gene evolution

J Ruiz-Orera, P Verdaguer-Grau… - Nature ecology & …, 2018 - nature.com
Accumulating evidence indicates that some protein-coding genes have originated de novo
from previously non-coding genomic sequences. However, the processes underlying de …

Engram-specific transcriptome profiling of contextual memory consolidation

P Rao-Ruiz, JJ Couey, IM Marcelo… - Nature …, 2019 - nature.com
Sparse populations of neurons in the dentate gyrus (DG) of the hippocampus are causally
implicated in the encoding of contextual fear memories. However, engram-specific …

PROST: quantitative identification of spatially variable genes and domain detection in spatial transcriptomics

Y Liang, G Shi, R Cai, Y Yuan, Z Xie, L Yu… - Nature …, 2024 - nature.com
Computational methods have been proposed to leverage spatially resolved transcriptomic
data, pinpointing genes with spatial expression patterns and delineating tissue domains …

A gene expression atlas for different kinds of stress in the mouse brain

T Flati, S Gioiosa, G Chillemi, A Mele, A Oliverio… - Scientific Data, 2020 - nature.com
Stressful experiences are part of everyday life and animals have evolved physiological and
behavioral responses aimed at coping with stress and maintaining homeostasis. However …

Polyglutamine-mediated ribotoxicity disrupts proteostasis and stress responses in Huntington's disease

R Aviner, TT Lee, VB Masto, KH Li, R Andino… - Nature Cell …, 2024 - nature.com
Huntington's disease (HD) is a neurodegenerative disorder caused by expansion of a CAG
trinucleotide repeat in the Huntingtin (HTT) gene, encoding a homopolymeric polyglutamine …