Integrative computational modeling of protein interactions

JP Rodrigues, AMJJ Bonvin - The FEBS journal, 2014 - Wiley Online Library
Protein interactions define the homeostatic state of the cell. Our ability to understand these
interactions and their role in both health and disease is tied to our knowledge of the 3D …

Protein–protein docking dealing with the unknown

IS Moreira, PA Fernandes… - Journal of computational …, 2010 - Wiley Online Library
Protein–protein binding is one of the critical events in biology, and knowledge of proteic
complexes three‐dimensional structures is of fundamental importance for the biochemical …

Chitinase-3-like 1 protein complexes modulate macrophage-mediated immune suppression in glioblastoma

A Chen, Y Jiang, Z Li, L Wu, U Santiago… - The Journal of …, 2021 - Am Soc Clin Investig
Glioblastoma (GBM), the most common and lethal primary brain tumor, with a median
survival rate of only 15 months, remains incurable despite intensive multimodal treatment of …

Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses

J Sui, WC Hwang, S Perez, G Wei, D Aird… - Nature structural & …, 2009 - nature.com
Influenza virus remains a serious health threat, owing to its ability to evade immune
surveillance through rapid genetic drift and reassortment. Here we used a human non …

A broadly neutralizing anti-influenza antibody reveals ongoing capacity of haemagglutinin-specific memory B cells to evolve

Y Fu, Z Zhang, J Sheehan, Y Avnir, C Ridenour… - Nature …, 2016 - nature.com
Understanding the natural evolution and structural changes involved in broadly neutralizing
antibody (bnAb) development holds great promise for improving the design of prophylactic …

A dimer-monomer switch controls CHIP-dependent substrate ubiquitylation and processing

V Balaji, L Müller, R Lorenz, É Kevei, WH Zhang… - Molecular Cell, 2022 - cell.com
The high substrate selectivity of the ubiquitin/proteasome system is mediated by a large
group of E3 ubiquitin ligases. The ubiquitin ligase CHIP regulates the degradation of …

Discovery and biological characterization of PRMT5: MEP50 protein–protein interaction inhibitors

AM Asberry, X Cai, X Deng, U Santiago… - Journal of medicinal …, 2022 - ACS Publications
Protein arginine methyltransferase 5 (PRMT5) is a master epigenetic regulator and an
extensively validated therapeutic target in multiple cancers. Notably, PRMT5 is the only …

Ligand-independent antiapoptotic function of estrogen receptor-β in lung cancer cells

GF Zhang, N Yanamala, KL Lathrop… - Molecular …, 2010 - academic.oup.com
Recent studies have demonstrated the presence of estrogen receptor (ER) β in the
mitochondria in various cell types and tissues, but the exact function of this localization …

In silico-in vitro screening of protein-protein interactions: towards the next generation of therapeutics

BO Villoutreix, K Bastard, O Sperandio… - Current …, 2008 - ingentaconnect.com
Protein-protein interactions (PPIs) have a pivotal role in many biological processes
suggesting that targeting macromolecular complexes will open new avenues for the design …

Probing protein flexibility reveals a mechanism for selective promiscuity

NA Pabon, CJ Camacho - Elife, 2017 - elifesciences.org
Many eukaryotic regulatory proteins adopt distinct bound and unbound conformations, and
use this structural flexibility to bind specifically to multiple partners. However, we lack an …