[HTML][HTML] Species delimitation 4.0: integrative taxonomy meets artificial intelligence

K Karbstein, L Kösters, L Hodač, M Hofmann… - Trends in Ecology & …, 2024 - cell.com
Although species are central units for biological research, recent findings in genomics are
raising awareness that what we call species can be ill-founded entities due to solely …

Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex

K Karbstein, S Tomasello, L Hodač, N Wagner… - New …, 2022 - Wiley Online Library
Speciation via hybridization and polyploidization is a major evolutionary force in plant
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …

Phylogenomic relationships and evolution of polyploid Salix species revealed by RAD sequencing data

ND Wagner, L He, E Hörandl - Frontiers in Plant Science, 2020 - frontiersin.org
Polyploidy is common in the genus Salix. However, little is known about the origin,
parentage and genomic composition of polyploid species because of a lack of suitable …

[HTML][HTML] Resolving phylogeny and polyploid parentage using genus-wide genome-wide sequence data from birch trees

N Wang, LJ Kelly, HA McAllister, J Zohren… - Molecular Phylogenetics …, 2021 - Elsevier
Numerous plant genera have a history including frequent hybridisation and polyploidisation
(allopolyploidisation), which means that their phylogeny is a network of reticulate evolution …

Geometric morphometric versus genomic patterns in a large polyploid plant species complex

L Hodač, K Karbstein, S Tomasello, J Wäldchen… - Biology, 2023 - mdpi.com
Simple Summary Plant species complexes with hybridization and asexual reproduction
often exhibit complex morphological patterns, which is problematic for classifications. Here …

Allele sorting as a novel approach to resolving the origin of allotetraploids using Hyb-Seq data: a case study of the Balkan mountain endemic Cardamine …

M Šlenker, A Kantor, K Marhold, R Schmickl… - Frontiers in Plant …, 2021 - frontiersin.org
Mountains of the Balkan Peninsula are significant biodiversity hotspots with great species
richness and a large proportion of narrow endemics. Processes that have driven the …

Phylogenomics unravels Quaternary vicariance and allopatric speciation patterns in temperate‐montane plant species: A case study on the Ranunculus auricomus …

S Tomasello, K Karbstein, L Hodač… - Molecular …, 2020 - Wiley Online Library
The time frame and geographical patterns of diversification processes in European
temperate‐montane herbs are still not well understood. We used the sexual species of the …

Phylogenomics supported by geometric morphometrics reveals delimitation of sexual species within the polyploid apomictic Ranunculus auricomus complex …

K Karbstein, S Tomasello, L Hodač, FG Dunkel… - Taxon, 2020 - Wiley Online Library
Species are the basic units of biodiversity and evolution. Nowadays, they are widely
considered as ancestor‐descendant lineages. Their definition remains a persistent …

Identifying climatic drivers of hybridization with a new ancestral niche reconstruction method

RA Folk, ML Gaynor, NJ Engle-Wrye… - Systematic …, 2023 - academic.oup.com
Applications of molecular phylogenetic approaches have uncovered evidence of
hybridization across numerous clades of life, yet the environmental factors responsible for …

[HTML][HTML] Towards accurate, contiguous and complete alignment-based polyploid phasing algorithms

O Abou Saada, A Friedrich, J Schacherer - Genomics, 2022 - Elsevier
Phasing, and in particular polyploid phasing, have been challenging problems held back by
the limited read length of high-throughput short read sequencing methods which can't …