Protein interaction networks in neurodegenerative diseases: From physiological function to aggregation

G Calabrese, C Molzahn, T Mayor - Journal of Biological Chemistry, 2022 - ASBMB
The accumulation of protein inclusions is linked to many neurodegenerative diseases that
typically develop in older individuals, due to a combination of genetic and environmental …

Recent progress in mass spectrometry-based strategies for elucidating protein–protein interactions

TY Low, SE Syafruddin, MA Mohtar… - Cellular and Molecular …, 2021 - Springer
Protein–protein interactions are fundamental to various aspects of cell biology with many
protein complexes participating in numerous fundamental biological processes such as …

Spatiotemporally-resolved mapping of RNA binding proteins via functional proximity labeling reveals a mitochondrial mRNA anchor promoting stress recovery

W Qin, SA Myers, DK Carey, SA Carr, AY Ting - Nature communications, 2021 - nature.com
Proximity labeling (PL) with genetically-targeted promiscuous enzymes has emerged as a
powerful tool for unbiased proteome discovery. By combining the spatiotemporal specificity …

Inflammation causes remodeling of mitochondrial cytochrome c oxidase mediated by the bifunctional gene C15orf48

SA Clayton, KK Daley, L MacDonald… - Science …, 2021 - science.org
Dysregulated mitochondrial function is a hallmark of immune-mediated inflammatory
diseases. Cytochrome c oxidase (C c O), which mediates the rate-limiting step in …

Functional diversity of apolipoprotein E: from subcellular localization to mitochondrial function

J Rueter, G Rimbach, P Huebbe - Cellular and Molecular Life Sciences, 2022 - Springer
Human apolipoprotein E (APOE), originally known for its role in lipid metabolism, is
polymorphic with three major allele forms, namely, APOEε2, APOEε3, and APOEε4, leading …

HERG channel and cancer: a mechanistic review of carcinogenic processes and therapeutic potential

S He, MT Moutaoufik, S Islam, A Persad, A Wu… - … et Biophysica Acta (BBA …, 2020 - Elsevier
The human ether-à-go-go related gene (HERG) encodes the alpha subunit of Kv11. 1, which
is a voltage-gated K+ channel protein mainly expressed in heart and brain tissue. HERG …

Defining mitochondrial protein functions through deep multiomic profiling

JW Rensvold, E Shishkova, Y Sverchkov, IJ Miller… - Nature, 2022 - nature.com
Mitochondria are epicentres of eukaryotic metabolism and bioenergetics. Pioneering efforts
in recent decades have established the core protein componentry of these organelles and …

Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling

J Pei, J Zhang, Q Cong - Bioinformatics, 2022 - academic.oup.com
Motivation Recent development of deep-learning methods has led to a breakthrough in the
prediction accuracy of 3D protein structures. Extending these methods to protein pairs is …

[HTML][HTML] Insights into SACS pathological attributes in autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS)☆

KA Aly, MT Moutaoufik, M Zilocchi, S Phanse… - Current Opinion in …, 2022 - Elsevier
Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a rare early-onset
neurodegenerative disease caused by mutations in the SACS gene, encoding Sacsin. Initial …

[HTML][HTML] Trends in co-fractionation mass spectrometry: A new gold-standard in global protein interaction network discovery

RK Goel, N Bithi, A Emili - Current Opinion in Structural Biology, 2024 - Elsevier
Co-fractionation mass spectrometry (CF-MS) uses biochemical fractionation to isolate and
characterize macromolecular complexes from cellular lysates without the need for affinity …