Ubiquitin ligases: structure, function, and regulation

N Zheng, N Shabek - Annual review of biochemistry, 2017 - annualreviews.org
Ubiquitin E3 ligases control every aspect of eukaryotic biology by promoting protein
ubiquitination and degradation. At the end of a three-enzyme cascade, ubiquitin ligases …

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation

K Van Roey, B Uyar, RJ Weatheritt, H Dinkel… - Chemical …, 2014 - ACS Publications
The eukaryotic cell is a bustling collection of macromolecules acting cooperatively to
mediate the functions required for cell viability. Specific, context-dependent and tightly …

Structural insights into Ubr1-mediated N-degron polyubiquitination

M Pan, Q Zheng, T Wang, L Liang, J Mao, C Zuo… - Nature, 2021 - nature.com
The N-degron pathway targets proteins that bear a destabilizing residue at the N terminus
for proteasome-dependent degradation. In yeast, Ubr1—a single-subunit E3 ligase—is …

Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5

LA Hehl, D Horn-Ghetko, JR Prabu, R Vollrath… - Nature Chemical …, 2024 - nature.com
Ubiquitin (Ub) chain formation by homologous to E6AP C-terminus (HECT)-family E3 ligases
regulates vast biology, yet the structural mechanisms remain unknown. We used chemistry …

The N‐end rule pathway and regulation by proteolysis

A Varshavsky - Protein science, 2011 - Wiley Online Library
The N‐end rule relates the regulation of the in vivo half‐life of a protein to the identity of its N‐
terminal residue. Degradation signals (degrons) that are targeted by the N‐end rule pathway …

AAA+ proteases: ATP-fueled machines of protein destruction

RT Sauer, TA Baker - Annual review of biochemistry, 2011 - annualreviews.org
AAA+ family proteolytic machines (ClpXP, ClpAP, ClpCP, HslUV, Lon, FtsH, PAN/20S, and
the 26S proteasome) perform protein quality control and are used in regulatory circuits in all …

Cryo‐EM structure of the chain‐elongating E3 ubiquitin ligase UBR5

Z Hodáková, I Grishkovskaya, HL Brunner… - The EMBO …, 2023 - embopress.org
UBR5 is a nuclear E3 ligase that ubiquitinates a vast range of substrates for proteasomal
degradation. This HECT domain‐containing ubiquitin ligase has recently been identified as …

How the ends signal the end: regulation by E3 ubiquitin ligases recognizing protein termini

D Sherpa, J Chrustowicz, BA Schulman - Molecular cell, 2022 - cell.com
Specificity of eukaryotic protein degradation is determined by E3 ubiquitin ligases and their
selective binding to protein motifs, termed" degrons," in substrates for ubiquitin-mediated …

p62/SQSTM1/Sequestosome-1 is an N-recognin of the N-end rule pathway which modulates autophagosome biogenesis

H Cha-Molstad, JE Yu, Z Feng, SH Lee, JG Kim… - Nature …, 2017 - nature.com
Macroautophagy mediates the selective degradation of proteins and non-proteinaceous
cellular constituents. Here, we show that the N-end rule pathway modulates …

The N-end rule pathway

T Tasaki, SM Sriram, KS Park… - Annual review of …, 2012 - annualreviews.org
The N-end rule pathway is a proteolytic system in which N-terminal residues of short-lived
proteins are recognized by recognition components (N-recognins) as essential components …