Clinical potential of mass spectrometry-based proteogenomics

B Zhang, JR Whiteaker, AN Hoofnagle… - Nature Reviews …, 2019 - nature.com
Cancer genomics research aims to advance personalized oncology by finding and targeting
specific genetic alterations associated with cancers. In genome-driven oncology, treatments …

Protein identification strategies in MALDI imaging mass spectrometry: a brief review

DJ Ryan, JM Spraggins, RM Caprioli - Current opinion in chemical biology, 2019 - Elsevier
Matrix assisted laser desorption/ionization (MALDI) imaging mass spectrometry (IMS) is a
powerful technology used to investigate the spatial distributions of thousands of molecules …

Intraventricular B7-H3 CAR T cells for diffuse intrinsic pontine glioma: preliminary first-in-human bioactivity and safety

NA Vitanza, AL Wilson, W Huang, K Seidel, C Brown… - Cancer discovery, 2023 - AACR
Diffuse intrinsic pontine glioma (DIPG) remains a fatal brainstem tumor demanding
innovative therapies. As B7-H3 (CD276) is expressed on central nervous system (CNS) …

Integrated proteogenomic characterization across major histological types of pediatric brain cancer

F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury… - Cell, 2020 - cell.com
We report a comprehensive proteogenomics analysis, including whole-genome sequencing,
RNA sequencing, and proteomics and phosphoproteomics profiling, of 218 tumors across 7 …

Loss of TGFβ signaling increases alternative end-joining DNA repair that sensitizes to genotoxic therapies across cancer types

Q Liu, L Palomero, J Moore, I Guix, R Espín… - Science translational …, 2021 - science.org
Among the pleotropic roles of transforming growth factor–β (TGFβ) signaling in cancer, its
impact on genomic stability is least understood. Inhibition of TGFβ signaling increases use of …

Phosphoproteomics: a valuable tool for uncovering molecular signaling in cancer cells

JS Gerritsen, FM White - Expert review of proteomics, 2021 - Taylor & Francis
Introduction Many pathologies, including cancer, have been associated with aberrant
phosphorylation-mediated signaling networks that drive altered cell proliferation, migration …

Targeted Phosphoproteomics of Human Saliva Extracellular Vesicles via Multiple Reaction Monitoring Cubed (MRM3)

D Wei, J Sun, Z Luo, G Zhang, Y Liu, H Zhang… - Analytical …, 2024 - ACS Publications
Oral squamous cell carcinoma (OSCC) has become a global health problem due to its
increasing incidence and high mortality rate. Early intervention through monitoring of the …

Targeted mass spectrometry enables multiplexed quantification of immunomodulatory proteins in clinical biospecimens

JR Whiteaker, RA Lundeen, L Zhao… - Frontiers in …, 2021 - frontiersin.org
Immunotherapies are revolutionizing cancer care, producing durable responses and
potentially cures in a subset of patients. However, response rates are low for most tumors …

pRAD50: a novel and clinically applicable pharmacodynamic biomarker of both ATM and ATR inhibition identified using mass spectrometry and …

GN Jones, C Rooney, N Griffin, M Roudier… - British journal of …, 2018 - nature.com
Background AZD0156 and AZD6738 are potent and selective inhibitors of ataxia-
telangiectasia-kinase (ATM) and ataxia-telangiectasia-mutated and Rad3-related (ATR) …

Targeted mass-spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP kinase, and AKT signaling

JR Whiteaker, K Sharma, MA Hoffman, E Kuhn… - Cell reports …, 2021 - cell.com
A primary goal of the US National Cancer Institute's Ras initiative at the Frederick National
Laboratory for Cancer Research is to develop methods to quantify RAS signaling to facilitate …