Intrinsically disordered proteins and their “mysterious”(meta) physics

VN Uversky - Frontiers in Physics, 2019 - frontiersin.org
Recognition of the natural abundance and functional importance of intrinsically disordered
proteins (IDPs), and protein hybrids that contain both intrinsically disordered protein regions …

Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes

A Cumberworth, G Lamour, MM Babu… - Biochemical …, 2013 - portlandpress.com
Because of their pervasiveness in eukaryotic genomes and their unique properties,
understanding the role that ID (intrinsically disordered) regions in proteins play in the …

Interactome mapping provides a network of neurodegenerative disease proteins and uncovers widespread protein aggregation in affected brains

C Haenig, N Atias, AK Taylor, A Mazza, MH Schaefer… - Cell reports, 2020 - cell.com
Interactome maps are valuable resources to elucidate protein function and disease
mechanisms. Here, we report on an interactome map that focuses on neurodegenerative …

Hub promiscuity in protein-protein interaction networks

A Patil, K Kinoshita, H Nakamura - International journal of molecular …, 2010 - mdpi.com
Hubs are proteins with a large number of interactions in a protein-protein interaction
network. They are the principal agents in the interaction network and affect its function and …

Life in phases: intra-and inter-molecular phase transitions in protein solutions

VN Uversky, AV Finkelstein - Biomolecules, 2019 - mdpi.com
Proteins, these evolutionarily-edited biological polymers, are able to undergo intramolecular
and intermolecular phase transitions. Spontaneous intramolecular phase transitions define …

Circulating extracellular vesicles and rheumatoid arthritis: a proteomic analysis

M Alghamdi, SA Alamry, SM Bahlas… - Cellular and Molecular …, 2022 - Springer
Circulating extracellular vesicles (EVs) are membrane-bound nanoparticles secreted by
most cells for intracellular communication and transportation of biomolecules. EVs carry …

Intrinsically disordered proteins in chronic diseases

P Kulkarni, VN Uversky - Biomolecules, 2019 - mdpi.com
It is now increasingly evident that a large fraction of the human proteome comprises proteins
that, under physiological conditions, lack fixed, ordered 3D structures as a whole or have …

Wrecked regulation of intrinsically disordered proteins in diseases: pathogenicity of deregulated regulators

VN Uversky - Frontiers in Molecular Biosciences, 2014 - frontiersin.org
Biologically active proteins without stable tertiary structure are common in all known
proteomes. Functions of these intrinsically disordered proteins (IDPs) are typically related to …

Oxidized base damage and single-strand break repair in mammalian genomes: role of disordered regions and posttranslational modifications in early enzymes

ML Hegde, T Izumi, S Mitra - … in molecular biology and translational science, 2012 - Elsevier
Oxidative genome damage induced by reactive oxygen species includes oxidized bases,
abasic (AP) sites, and single-strand breaks, all of which are repaired via the evolutionarily …

Economical evolution: microbes reduce the synthetic cost of extracellular proteins

DR Smith, MR Chapman - MBio, 2010 - Am Soc Microbiol
Protein evolution is not simply a race toward improved function. Because organisms
compete for limited resources, fitness is also affected by the relative economy of an …