Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming

A Soufi, MF Garcia, A Jaroszewicz, N Osman… - Cell, 2015 - cell.com
Pioneer transcription factors (TFs) access silent chromatin and initiate cell-fate changes,
using diverse types of DNA binding domains (DBDs). FoxA, the paradigm pioneer TF, has a …

RNA binding to CBP stimulates histone acetylation and transcription

DA Bose, G Donahue, D Reinberg, R Shiekhattar… - Cell, 2017 - cell.com
CBP/p300 are transcription co-activators whose binding is a signature of enhancers, cis-
regulatory elements that control patterns of gene expression in multicellular organisms …

A pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling

MA Frederick, KE Williamson… - Nature structural & …, 2023 - nature.com
To determine how different pioneer transcription factors form a targeted, accessible
nucleosome within compacted chromatin and collaborate with an ATP-dependent chromatin …

Structural features of transcription factors associating with nucleosome binding

MF Garcia, CD Moore, KN Schulz, O Alberto… - Molecular cell, 2019 - cell.com
Fate-changing transcription factors (TFs) scan chromatin to initiate new genetic programs
during cell differentiation and reprogramming. Yet the protein structure domains that allow …

Histone variants shape chromatin states in Arabidopsis

B Jamge, ZJ Lorković, E Axelsson, A Osakabe… - Elife, 2023 - elifesciences.org
How different intrinsic sequence variations and regulatory modifications of histones combine
in nucleosomes remain unclear. To test the importance of histone variants in the …

The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A. W

A Osakabe, B Jamge, E Axelsson, SA Montgomery… - Nature Cell …, 2021 - nature.com
Mobile transposable elements (TEs) not only participate in genome evolution but also
threaten genome integrity. In healthy cells, TEs that encode all of the components that are …

Crystal structure of the human centromeric nucleosome containing CENP-A

H Tachiwana, W Kagawa, T Shiga, A Osakabe, Y Miya… - Nature, 2011 - nature.com
In eukaryotes, accurate chromosome segregation during mitosis and meiosis is coordinated
by kinetochores, which are unique chromosomal sites for microtubule attachment …

[HTML][HTML] Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions

AJ Ruthenburg, H Li, TA Milne, S Dewell, RK McGinty… - Cell, 2011 - cell.com
Little is known about how combinations of histone marks are interpreted at the level of
nucleosomes. The second PHD finger of human BPTF is known to specifically recognize …

ETV2 functions as a pioneer factor to regulate and reprogram the endothelial lineage

W Gong, S Das, JE Sierra-Pagan, E Skie, N Dsouza… - Nature cell …, 2022 - nature.com
The vasculature is an essential organ for the delivery of blood and oxygen to all tissues of
the body and is thus relevant to the treatment of ischaemic diseases, injury-induced …

Reconstitution of mitotic chromatids with a minimum set of purified factors

K Shintomi, TS Takahashi, T Hirano - Nature cell biology, 2015 - nature.com
The assembly of mitotic chromosomes, each composed of a pair of rod-shaped chromatids,
is an essential prerequisite for accurate transmission of the genome during cell division. It …