Charting a path to success in virtual screening

S Forli - Molecules, 2015 - mdpi.com
Docking is commonly applied to drug design efforts, especially high-throughput virtual
screenings of small molecules, to identify new compounds that bind to a given target …

3D-QSAR approaches in drug design: perspectives to generate reliable CoMFA models

C Camilo Melo-Filho, R Campos Braga… - … computer-aided drug …, 2014 - benthamdirect.com
Drug discovery is mostly guided by innovative and knowledge by the application of
experimental and computational approaches. Quantitative structure-activity relationships …

3D-QSAR, molecular docking, DFT and ADMET studies on quinazoline derivatives to explore novel DHFR inhibitors

H Hadni, M Bakhouch, M Elhallaoui - Journal of Biomolecular …, 2023 - Taylor & Francis
Resistance to folate antagonists is caused by mutations in the dihydrofolate reductase
(DHFR) genes. These mutations affect the amino acids at positions 51, 59, 108 and 164 of …

A systematic investigation of quaternary ammonium ions as asymmetric phase-transfer catalysts. Application of quantitative structure activity/selectivity relationships

SE Denmark, ND Gould, LM Wolf - The Journal of organic …, 2011 - ACS Publications
Although the synthetic utility of asymmetric phase-transfer catalysis continues to expand, the
number of proven catalyst types and design criteria remains limited. At the origin of this …

www. 3d-qsar. com: a web portal that brings 3-D QSAR to all electronic devices—the Py-CoMFA web application as tool to build models from pre-aligned datasets

R Ragno - Journal of computer-aided molecular design, 2019 - Springer
Comparative molecular field analysis (CoMFA), introduced in 1988, was the first 3-D QSAR
method ever published and sold. Since then thousands of application, articles and citation …

Quantum-based machine learning and AI models to generate force field parameters for drug-like small molecules

SK Mudedla, A Braka, S Wu - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
Force fields for drug-like small molecules play an essential role in molecular dynamics
simulations and binding free energy calculations. In particular, the accurate generation of …

Acacetin and pinostrobin as a promising inhibitor of cancer-associated protein kinases

S Singh, A Meena, S Luqman, A Meena - Food and Chemical Toxicology, 2021 - Elsevier
Protein kinases associated with cancer genes play vital role in angiogenesis, invasion,
motility, proliferation, and survival. Therefore, cancer prevention/treatment, targeting kinases …

Design, parallel synthesis of Biginelli 1, 4-dihydropyrimidines using PTSA as a catalyst, evaluation of anticancer activity and structure activity relationships via 3D …

S Faizan, BRP Kumar, NL Naishima, T Ashok… - Bioorganic …, 2021 - Elsevier
Abstract Biginelli 1, 4-dihydropyrimidines are extensively screened for their potential
anticancer activity in the last decade. In this context, a series of Biginelli 1, 4 …

A comparison of different electrostatic potentials on prediction accuracy in CoMFA and CoMSIA studies

KC Tsai, YC Chen, NW Hsiao, CL Wang, CL Lin… - European Journal of …, 2010 - Elsevier
Computational chemistry is playing an increasingly important role in drug design and
discovery, structural biology, and quantitative structure–activity relationship (QSAR) studies …

Discovery of anti-colon cancer agents targeting wild-type and mutant p53 using computer-aided drug design

H Hadni, M Elhallaoui - Journal of Biomolecular Structure and …, 2023 - Taylor & Francis
Mutations in the p53 gene are common and occur in over 50% of all cancers, as it is
involved in DNA damage repair, cell cycle regulation and apoptosis. Moreover, the p53 …