Genomic innovation for crop improvement

MW Bevan, C Uauy, BBH Wulff, J Zhou, K Krasileva… - Nature, 2017 - nature.com
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …

How important are transposons for plant evolution?

D Lisch - Nature Reviews Genetics, 2013 - nature.com
For decades, transposable elements have been known to produce a wide variety of changes
in plant gene expression and function. This has led to the idea that transposable element …

The reference genome of tea plant and resequencing of 81 diverse accessions provide insights into its genome evolution and adaptation

E Xia, W Tong, Y Hou, Y An, L Chen, Q Wu, Y Liu, J Yu… - Molecular plant, 2020 - cell.com
Tea plant is an important economic crop, which is used to produce the world's oldest and
most widely consumed tea beverages. Here, we present a high-quality reference genome …

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

DJ Bertioli, SB Cannon, L Froenicke, G Huang… - Nature …, 2016 - nature.com
Cultivated peanut (Arachis hypogaea) is an allotetraploid with closely related subgenomes
of a total size of∼ 2.7 Gb. This makes the assembly of chromosomal pseudomolecules very …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Dynamics of genome size evolution in birds and mammals

A Kapusta, A Suh, C Feschotte - Proceedings of the …, 2017 - National Acad Sciences
Genome size in mammals and birds shows remarkably little interspecific variation compared
with other taxa. However, genome sequencing has revealed that many mammal and bird …

The Norway spruce genome sequence and conifer genome evolution

B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin… - Nature, 2013 - nature.com
Conifers have dominated forests for more than 200 million years and are of huge ecological
and economic importance. Here we present the draft assembly of the 20-gigabase genome …

Polyploidy and genome evolution in plants

PS Soltis, DB Marchant, Y Van de Peer… - Current opinion in …, 2015 - Elsevier
Plant genomes vary in size and complexity, fueled in part by processes of whole-genome
duplication (WGD; polyploidy) and subsequent genome evolution. Despite repeated …

The contributions of transposable elements to the structure, function, and evolution of plant genomes

JL Bennetzen, H Wang - Annual review of plant biology, 2014 - annualreviews.org
Transposable elements (TEs) are the key players in generating genomic novelty by a
combination of the chromosome rearrangements they cause and the genes that come under …

Ecological and evolutionary significance of genomic GC content diversity in monocots

P Šmarda, P Bureš, L Horová… - Proceedings of the …, 2014 - National Acad Sciences
Genomic DNA base composition (GC content) is predicted to significantly affect genome
functioning and species ecology. Although several hypotheses have been put forward to …